| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 156 [0] | [0] 154 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 153 (1.420) | 77/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 153 total aligned reads displayed.
TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT > 1:70882/1‑50TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT > 1:5751677/1‑50TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT < 1:1901920/50‑1TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT > 1:4466584/1‑50TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT > 1:3742871/1‑50 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:5141561/1‑50 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:4890820/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGCTCAGGATGATAACGTTT > 1:271312/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:1648389/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:1203106/49‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:7461245/49‑1 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:6759275/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:5450094/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:3105752/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:1334624/1‑50 ATTTAAGGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG < 1:7280229/49‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:3790041/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:3575709/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:3949620/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:7648714/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:4034714/50‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC < 1:6220132/50‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:1607551/1‑50 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:4965513/1‑50 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGACAACGTTTGCC > 1:4659181/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:7520059/1‑50 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 1:8247853/49‑1 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:3398464/1‑49 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 1:4030528/49‑1 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGC < 1:6226991/49‑1 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:3855657/1‑48 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG < 1:3622666/50‑1 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG > 1:5004469/1‑50 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:2597891/50‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:5407098/50‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:2567553/50‑1 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:2103037/1‑50 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT < 1:3280393/50‑1 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC < 1:8052754/50‑1 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:7698027/1‑49 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:4883903/1‑49 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC > 1:2434850/1‑49 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:3121734/1‑50 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT < 1:8127336/50‑1 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:2389176/1‑50 TATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT > 1:3308886/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT < 1:2025089/49‑1 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCC > 1:1915229/1‑50 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCC < 1:2569632/50‑1 CATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 1:7998538/1‑50 CATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 1:4354565/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT < 1:1546278/50‑1 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:1264458/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT < 1:1682202/50‑1 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC < 1:552072/49‑1 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 1:5238960/1‑50 ATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT > 1:2479276/1‑50 ATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT > 1:2442221/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:5460981/50‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:5857323/50‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT > 1:2266730/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT < 1:6169681/49‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT < 1:5877202/49‑1 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG > 1:6974989/1‑50 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG > 1:2934057/1‑50 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG < 1:6355883/49‑1 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT > 1:1084872/1‑50 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT > 1:6348567/1‑50 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT > 1:2182839/1‑50 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC < 1:213905/50‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC < 1:6147989/50‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:6695916/1‑50 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG < 1:7572218/50‑1 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:3937742/1‑49 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG > 1:3186043/1‑49 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC > 1:3236288/1‑50 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC > 1:3477853/1‑50 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC > 1:2298494/1‑50 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC > 1:3583981/1‑50 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT > 1:6684827/1‑50 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC > 1:4376984/1‑50 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:8159446/1‑49 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:4492058/1‑50 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:2072937/1‑50 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT < 1:4282084/50‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT < 1:794445/50‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT < 1:3262652/50‑1 TGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT > 1:2923118/1‑49 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAAT < 1:951569/50‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:536939/49‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:6746088/49‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA > 1:4206203/1‑49 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG > 1:7588311/1‑50 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC < 1:6103121/49‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAAAATACG < 1:5625310/50‑1 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > 1:4234571/1‑50 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC < 1:8123854/50‑1 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC < 1:785985/50‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:4557749/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:6111157/1‑50 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |