| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 156 [0] | [0] 154 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 153 (1.420) | 77/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 154 total aligned reads displayed.
AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 | tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt > 1:5751677‑M2/50‑50 (MQ=255)tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt > 1:70882‑M2/50‑50 (MQ=255)tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt > 1:3742871‑M2/50‑50 (MQ=255)tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt < 1:1901920‑M2/1‑1 (MQ=255) gtcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt > 1:4890820‑M2/49‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:6016654‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 1:1648389‑M2/3‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt < 1:1203106‑M2/2‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt < 1:2305788‑M2/2‑1 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 1:6759275‑M2/47‑50 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 1:5450094‑M2/47‑50 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 1:1334624‑M2/47‑50 (MQ=255) atttaagggcattatcatatttacgaagagatcaggatgataacgTTTg < 1:7280229‑M2/4‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc < 1:4034714‑M2/5‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc < 1:7648714‑M2/5‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc < 1:3949620‑M2/5‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc < 1:3575709‑M2/5‑1 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc < 1:2097677‑M2/6‑1 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc > 1:1607551‑M2/45‑50 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgacaacgTTTGcc > 1:4659181‑M2/45‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:7520059‑M2/44‑50 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg < 1:8247853‑M2/7‑1 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:3398464‑M2/43‑49 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:3855657‑M2/42‑48 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:2573107‑M2/42‑48 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGc < 1:6226991‑M2/8‑1 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGc < 1:3285940‑M2/8‑1 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 1:5004469‑M2/41‑50 (MQ=255) aggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAgg < 1:2597891‑M2/11‑1 (MQ=255) aggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAgg < 1:5407098‑M2/11‑1 (MQ=255) aggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAgg < 1:2567553‑M2/11‑1 (MQ=255) ggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt < 1:3745097‑M2/12‑1 (MQ=255) ggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt < 1:3280393‑M2/12‑1 (MQ=255) ggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt < 1:4902700‑M2/12‑1 (MQ=255) gcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt > 1:7698027‑M2/38‑49 (MQ=255) gcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTc < 1:8052754‑M2/13‑1 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:4676141‑M2/36‑50 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:3121734‑M2/36‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt < 1:8127336‑M2/16‑1 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:2389176‑M2/35‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt < 1:2490452‑M2/16‑1 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:3341322‑M2/34‑50 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt < 1:2025089‑M2/17‑1 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTcc > 1:3017488‑M2/32‑50 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTcc > 1:7290660‑M2/32‑50 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTcc > 1:1915229‑M2/32‑50 (MQ=255) catatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc > 1:7998538‑M2/31‑50 (MQ=255) catatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc > 1:4354565‑M2/31‑50 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc < 1:552072‑M2/20‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt < 1:1682202‑M2/21‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt < 1:1546278‑M2/21‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt > 1:1264458‑M2/30‑50 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 1:5238960‑M2/29‑50 (MQ=255) atttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt > 1:2442221‑M2/28‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 1:5460981‑M2/24‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 1:3256994‑M2/24‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt > 1:2266730‑M2/27‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 1:4414511‑M2/24‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt < 1:6169681‑M2/23‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt < 1:2757067‑M2/23‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt < 1:5877202‑M2/23‑1 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 1:2934057‑M2/25‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 1:6974989‑M2/25‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 1:7536861‑M2/25‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg < 1:6355883‑M2/25‑1 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg < 1:316437‑M2/25‑1 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt > 1:1084872‑M2/24‑50 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt > 1:6348567‑M2/24‑50 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt < 1:4237118‑M2/27‑1 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc < 1:213905‑M2/29‑1 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:6695916‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc < 1:6143363‑M2/29‑1 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGa < 1:2161856‑M2/31‑1 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc < 1:5013817‑M2/33‑1 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc > 1:3236288‑M2/18‑50 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt < 1:3518067‑M2/34‑1 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt > 1:6684827‑M2/17‑50 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc > 1:4376984‑M2/16‑50 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:528998‑M2/35‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:6185656‑M2/35‑1 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:8159446‑M2/14‑49 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:4492058‑M2/13‑50 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 1:5824779‑M2/41‑1 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 1:794445‑M2/41‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataat < 1:951569‑M2/44‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataat < 1:2438758‑M2/44‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa < 1:6746088‑M2/43‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 1:2278228‑M2/7‑49 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc < 1:4547893‑M2/46‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg > 1:3999569‑M2/4‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg > 1:3607903‑M2/4‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg > 1:7588311‑M2/4‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg < 1:4054615‑M2/47‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAAAATACg < 1:5625310‑M2/47‑1 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGc < 1:785985‑M2/48‑1 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGc < 1:8123854‑M2/48‑1 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGc > 1:4234571‑M2/3‑50 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc < 1:390011‑M2/49‑1 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:6111157‑M2/2‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 1:198844/1‑50 (MQ=255) | AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |