| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 156 [0] | [0] 154 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 153 (1.420) | 77/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 156 total aligned reads displayed.
ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 | aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg < 1:6437742/50‑1 (MQ=255) tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt > 1:70882‑M1/1‑49 (MQ=255) tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt > 1:5751677‑M1/1‑49 (MQ=255) tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt > 1:4466584‑M1/1‑49 (MQ=255) tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt > 1:3742871‑M1/1‑49 (MQ=255) tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt < 1:1901920‑M1/50‑2 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:1648389‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt < 1:1203106‑M1/49‑3 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:1334624‑M1/1‑46 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:6759275‑M1/1‑46 (MQ=255) aTTTAAGGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:7280229‑M1/49‑5 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc < 1:4034714‑M1/50‑6 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc < 1:3949620‑M1/50‑6 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc < 1:6950417‑M1/50‑7 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc > 1:4965513‑M1/1‑44 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc < 1:6220132‑M1/50‑7 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc < 1:2097677‑M1/50‑7 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc > 1:1607551‑M1/1‑44 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGACAACGtttgcc > 1:4659181‑M1/1‑44 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:7520059‑M1/1‑43 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg < 1:4030528‑M1/49‑8 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg < 1:8247853‑M1/49‑8 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgc < 1:3285940‑M1/49‑9 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:62652‑M1/1‑41 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:3855657‑M1/1‑41 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:2573107‑M1/1‑41 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcagg < 1:2597891‑M1/50‑12 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcagg < 1:5407098‑M1/50‑12 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcagg < 1:2567553‑M1/50‑12 (MQ=255) ggCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt < 1:4902700‑M1/50‑13 (MQ=255) ggCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt < 1:3280393‑M1/50‑13 (MQ=255) ggCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 1:2103037‑M1/1‑38 (MQ=255) ggCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt < 1:3745097‑M1/50‑13 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc < 1:8052754‑M1/50‑14 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc < 1:1918229‑M1/50‑14 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 1:4883903‑M1/1‑37 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 1:7698027‑M1/1‑37 (MQ=255) cATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc > 1:5482712‑M1/1‑36 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:4676141‑M1/1‑35 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:3121734‑M1/1‑35 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat < 1:2490452‑M1/50‑17 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat < 1:8127336‑M1/50‑17 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat > 1:2389176‑M1/1‑34 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:3341322‑M1/1‑33 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt < 1:2025089‑M1/49‑18 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcc > 1:3017488‑M1/1‑31 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcc > 1:7290660‑M1/1‑31 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc > 1:4354565‑M1/1‑30 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc > 1:7998538‑M1/1‑30 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct < 1:1546278‑M1/50‑22 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct < 1:1682202‑M1/50‑22 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 1:1264458‑M1/1‑29 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:5238960‑M1/1‑28 (MQ=255) atTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt > 1:2442221‑M1/1‑27 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:5460981‑M1/50‑25 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:3256994‑M1/50‑25 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:5857323‑M1/50‑25 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt < 1:2757067‑M1/49‑24 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt < 1:6169681‑M1/49‑24 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt < 1:5877202‑M1/49‑24 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg > 1:2934057‑M1/1‑24 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg > 1:7536861‑M1/1‑24 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg < 1:316437‑M1/49‑26 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt > 1:6348567‑M1/1‑23 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt > 1:2182839‑M1/1‑23 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt > 1:1084872‑M1/1‑23 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc < 1:6147989‑M1/50‑30 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:6695916‑M1/1‑21 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccga < 1:2161856‑M1/50‑32 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa < 1:5427274‑M1/50‑33 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:2298494‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:3583981‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:3477853‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac < 1:5013817‑M1/50‑34 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:3236288‑M1/1‑17 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaact < 1:3518067‑M1/50‑35 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc > 1:4376984‑M1/1‑15 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc < 1:528998‑M1/50‑36 (MQ=255) tCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg < 1:671172‑M1/50‑37 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:7602990‑M1/1‑13 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:8159446‑M1/1‑13 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca > 1:4492058‑M1/1‑12 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat < 1:4282084‑M1/50‑42 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat < 1:794445‑M1/50‑42 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:5641583‑M1/1‑9 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataat < 1:2438758‑M1/50‑45 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataat < 1:951569‑M1/50‑45 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa > 1:4206203‑M1/1‑6 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa > 1:2278228‑M1/1‑6 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa < 1:6663867‑M1/49‑44 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg > 1:7588311‑M1/1‑3 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 1:7765365‑M1/50‑48 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg > 1:3607903‑M1/1‑3 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatac < 1:6103121‑M1/49‑47 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacaaaatacg < 1:5625310‑M1/50‑48 (MQ=255) cGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgc > 1:4234571‑M1/1‑2 (MQ=255) cGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgc < 1:8123854‑M1/50‑49 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:6111157‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:4557749‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc < 1:390011‑M1/50‑50 (MQ=255) | ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |