| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 210 [0] | [0] 209 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 162 (2.000) +CAGATAATTCAA |
66/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 241 total aligned reads displayed.
TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |||||||||||| GAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA < 1:794504/50‑1 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGAT < 1:6053773/50‑1 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:17831/1‑49 GTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGAT > 1:7763030/1‑49 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:4233935/1‑50 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:1395357/1‑50 CTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAAT > 1:4442705/1‑50 TCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:8204732/1‑50 TCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:2092444/1‑50 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:8003646/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA < 1:7041992/50‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA < 1:1313921/50‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:3936139/1‑49 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:54189/50‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:1006510/1‑48 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:7600695/1‑48 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG > 1:6534001/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC < 1:763123/49‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC < 1:7403665/49‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC < 1:2478404/49‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG < 1:7710857/48‑1 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG > 1:1585678/1‑50 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGG < 1:3450289/50‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:1835939/49‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:3587389/49‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:5881201/49‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:5786882/49‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:850118/49‑1 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG < 1:1948595/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT > 1:5353442/1‑49 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:5167537/49‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:7898934/50‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:4806629/49‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT < 1:1038548/50‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:6748877/1‑50 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:3631484/49‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:2275269/49‑1 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:5538036/1‑50 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:4855203/1‑50 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG > 1:4251377/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:4976612/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:1466202/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:814907/47‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:5664774/47‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGAT < 1:6761468/46‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGAT < 1:3018246/46‑1 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA > 1:6701115/1‑50 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA < 1:2818216/49‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG < 1:1273008/47‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG < 1:614046/47‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:7069570/1‑49 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:2422986/1‑49 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:3887130/1‑50 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:8033276/1‑50 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:3372076/1‑50 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:885937/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:2407332/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:5187410/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:154367/49‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:1671625/49‑1 TAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:111129/1‑50 TAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:2645110/1‑50 AAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT > 1:3033882/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT < 1:7529935/50‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:575504/49‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:221212/49‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:271109/49‑1 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT > 1:6209891/1‑50 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT < 1:6935223/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:5323735/1‑50 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:1891674/1‑50 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:6970340/1‑50 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:4793221/1‑50 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:6802569/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:4021493/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:6136577/1‑49 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA > 1:5493981/1‑50 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA > 1:650070/1‑50 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA > 1:5768758/1‑50 TATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC > 1:8130234/1‑50 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT < 1:7428652/50‑1 CAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT > 1:3114932/1‑49 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:4046282/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:7145845/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:3810883/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:5051149/50‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG < 1:2392529/50‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG < 1:7279399/50‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGA < 1:3268511/49‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGA < 1:4667231/49‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:6157606/1‑47 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGA < 1:3550198/50‑1 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGA < 1:4392854/50‑1 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA < 1:2001508/49‑1 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA < 1:3459333/49‑1 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA < 1:4216119/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:5662357/50‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:6304242/50‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:7656137/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:4290733/49‑1 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |