| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 210 [0] | [0] 209 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 162 (2.000) +CAGATAATTCAA |
66/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 209 total aligned reads displayed.
GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 | ctcctgattttagtaatctcttgatgctaagaactatcagataattcaaa < 1:54189‑M2/1‑1 (MQ=255)ctcctgattttagtaatctcttgatgctaagaactatcagataattcaaa < 1:7291117‑M2/1‑1 (MQ=255) cctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc > 1:1244419‑M2/48‑50 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAg < 1:7710857‑M2/2‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc < 1:7403665‑M2/3‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc < 1:2478404‑M2/3‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc < 1:763123‑M2/3‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGCg > 1:6534001‑M2/47‑50 (MQ=255) tgattttagtaatctcttgatgctaagaactatcagataattcaaAGCGt > 1:3032189‑M2/46‑50 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg < 1:6118215‑M2/7‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg < 1:3450289‑M2/7‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg > 1:1658788‑M2/44‑50 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg < 1:3587389‑M2/6‑1 (MQ=255) ttttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGc < 1:5153822‑M2/8‑1 (MQ=255) ttttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGc > 1:7092440‑M2/43‑50 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:850118‑M2/9‑1 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:7560182‑M2/9‑1 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:5786882‑M2/9‑1 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg < 1:2581425‑M2/10‑1 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg < 1:1036053‑M2/10‑1 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg < 1:8208864‑M2/10‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgtg < 1:4806629‑M2/12‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgtg < 1:3694701‑M2/12‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtga < 1:7898934‑M2/13‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtga < 1:535326‑M2/13‑1 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 1:2931598‑M2/14‑1 (MQ=255) aatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 1:15572‑M2/36‑49 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:6748877‑M2/35‑50 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 1:2275269‑M2/15‑1 (MQ=255) tctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:7973368‑M2/34‑49 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:5538036‑M2/32‑50 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:4855203‑M2/32‑50 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTgatgat < 1:6761468‑M2/17‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATa < 1:814907‑M2/18‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 1:4251377‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:1466202‑M2/19‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:4976612‑M2/19‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATaga < 1:5637877‑M2/20‑2 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa < 1:2818216‑M2/22‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 1:6139071‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:2422986‑M2/27‑49 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:2318409‑M2/27‑49 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 1:3372076‑M2/26‑50 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 1:3887130‑M2/26‑50 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 1:6196420‑M2/26‑50 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 1:8033276‑M2/26‑50 (MQ=255) gctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt > 1:885937‑M2/25‑50 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt < 1:154367‑M2/26‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt < 1:5286920‑M2/26‑1 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 1:2417181‑M2/23‑50 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 1:1093270‑M2/22‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt > 1:723211‑M2/21‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt < 1:7529935‑M2/30‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt < 1:221212‑M2/29‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt > 1:779042‑M2/20‑50 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:6935223‑M2/31‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:1877632‑M2/31‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:4235008‑M2/31‑1 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:2646695‑M2/19‑50 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:4714867‑M2/19‑50 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt < 1:6802569‑M2/32‑1 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:4793221‑M2/19‑50 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 1:4021493‑M2/33‑1 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa > 1:1907708‑M2/17‑50 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa > 1:5768758‑M2/17‑50 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa > 1:5493981‑M2/17‑50 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa > 1:650070‑M2/17‑50 (MQ=255) tatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc > 1:8130234‑M2/16‑50 (MQ=255) atcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg > 1:6730482‑M2/15‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:5663762‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:2067545‑M2/14‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt < 1:7428652‑M2/37‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:7043095‑M2/14‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTAAGTTTTTTACg < 1:2396062‑M2/36‑1 (MQ=255) cagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:3114932‑M2/13‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg > 1:6986862‑M2/12‑49 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:7145845‑M2/41‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:3810883‑M2/41‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:6217822‑M2/41‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:4046282‑M2/41‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:6020288‑M2/41‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:5051149‑M2/41‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:1829752‑M2/9‑49 (MQ=255) aattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:3072301‑M2/8‑48 (MQ=255) aattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:1672201‑M2/8‑48 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:6335092‑M2/7‑47 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:3268511‑M2/43‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:3550198‑M2/45‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:3891392‑M2/45‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:4392854‑M2/45‑1 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa < 1:2001508‑M2/46‑1 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa < 1:5168820‑M2/46‑1 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa < 1:3459333‑M2/46‑1 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa < 1:4216119‑M2/46‑1 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:5739332‑M2/4‑49 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAGTGAGaata < 1:5846916‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:7656137‑M2/47‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:127387‑M2/47‑1 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat < 1:6653137/50‑1 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat < 1:4522103/50‑1 (MQ=255) | GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |