| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 153 [0] | [0] 148 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 148 (1.370) | 76/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
Only 100 of 148 total aligned reads displayed.
TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509513‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > NC_000913/1555763‑1555809 TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA < 1:1758751/50‑1TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA < 1:1891397/50‑1 TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA > 1:3165430/1‑49 TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA > 1:5227653/1‑49 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC < 1:1051441/50‑1 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC < 1:8207045/50‑1 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 1:5884175/1‑49 TCCCGACACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC < 1:2148109/50‑1 CCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC > 1:7813066/1‑49 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA > 1:1044946/1‑49 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA > 1:5460022/1‑49 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA > 1:2410589/1‑49 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA < 1:3562228/49‑1 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA < 1:7864347/50‑1 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAA < 1:5778688/50‑1 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAA < 1:482085/50‑1 TCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA > 1:2025108/1‑50 CACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA > 1:78530/1‑49 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA > 1:4090512/1‑50 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA < 1:5011949/50‑1 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA > 1:8172270/1‑50 CTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC < 1:5741803/50‑1 CTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC < 1:2691192/50‑1 TCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 1:2593238/1‑49 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:4362861/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:2174918/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:6534682/1‑50 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 1:6335752/1‑50 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 1:2766295/1‑50 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 1:2974413/1‑50 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTG > 1:5576968/1‑50 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 1:3175617/49‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT < 1:3651004/48‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCA < 1:1988385/47‑1 CACCCGCGCCGGATGGCGGTTATATGGTTTCTAAACAAAAACACCATTGC > 1:4931248/1‑50 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGC < 1:8038223/50‑1 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTG < 1:1631144/49‑1 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG > 1:6393143/1‑50 CCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGC < 1:2855402/50‑1 CCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCA < 1:1833714/50‑1 CCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG > 1:2353672/1‑48 CGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAG > 1:2753733/1‑50 CGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAG < 1:7468826/50‑1 CGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAG < 1:3896491/50‑1 GCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG < 1:3139419/50‑1 CGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC < 1:5875024/50‑1 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCA < 1:2487156/50‑1 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:7452122/1‑49 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA > 1:397424/1‑50 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA < 1:4031420/50‑1 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA > 1:7702763/1‑50 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA > 1:7666109/1‑50 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 1:5386936/50‑1 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:8089875/1‑50 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG > 1:3119624/1‑50 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG > 1:4995770/1‑50 GAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGG > 1:6831774/1‑50 GAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGG > 1:3802804/1‑50 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:2119775/1‑50 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:6358117/1‑50 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG > 1:1244460/1‑50 GGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGT < 1:7295103/50‑1 GGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGT < 1:7172405/50‑1 GGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGT > 1:4395988/1‑50 GGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGT < 1:4393494/50‑1 GGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGT < 1:1837028/50‑1 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT < 1:112586/50‑1 CGGTTATATGGTTTCTAAACAAAAAGACCATTGCGCAGGCAATGGTGTTT < 1:7897822/50‑1 CGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT > 1:3411530/1‑49 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTA < 1:1006858/50‑1 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:7738682/1‑49 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:4229994/1‑49 GTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAA > 1:7972044/1‑50 GTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAA > 1:1760831/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:257519/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:4543088/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGCGTTTAAT > 1:5099404/1‑50 TATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC > 1:4742190/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:8162367/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC < 1:602701/49‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:4371640/1‑50 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT < 1:7739878/50‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:6759489/1‑50 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG < 1:6737457/49‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG < 1:1297967/49‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG < 1:2349567/49‑1 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA > 1:6777694/1‑50 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA > 1:6084869/1‑50 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:8218777/1‑50 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT < 1:7064249/50‑1 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAT < 1:2341364/49‑1 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTG < 1:2103482/50‑1 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:2981504/1‑49 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:7991849/1‑49 TTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:4126962/1‑48 TTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:5505293/1‑48 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:1886109/1‑50 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGA < 1:2263236/49‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:2556278/1‑49 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:3448086/1‑49 TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509513‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > NC_000913/1555763‑1555809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |