| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 164 [0] | [0] 166 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 157 (1.480) | 73/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
Only 100 of 164 total aligned reads displayed.
AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871980‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAA > NC_000913/1873467‑1873515 AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG < 1:7370154/50‑1 GGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGA < 1:350305/50‑1 GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT > 1:2024754/1‑50 GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT < 1:6754186/50‑1 GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT > 1:1539890/1‑50 CCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATG > 1:6236854/1‑50 CCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATG < 1:5035669/50‑1 CCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATG > 1:18702/1‑50 CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC < 1:7217452/50‑1 CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC > 1:7780757/1‑50 CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC < 1:4519126/50‑1 CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC < 1:6619100/50‑1 CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC > 1:1275353/1‑50 GCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCG > 1:3378781/1‑50 GCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCG < 1:4926382/50‑1 CAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGT < 1:4210524/50‑1 CAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCG > 1:4558200/1‑49 CAATCGAACTTTATCTGGTTTTCTCGTTTAACTAACCGAAGGAGATGCGT < 1:1921602/50‑1 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT < 1:8100528/50‑1 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT < 1:5446545/50‑1 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT < 1:4039889/50‑1 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT < 1:3660026/50‑1 TCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA < 1:1378087/50‑1 TCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT > 1:7034701/1‑49 CGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:5197308/1‑49 CGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:8100731/1‑49 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAA < 1:2794200/50‑1 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAA < 1:6547937/50‑1 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAA < 1:1500286/49‑1 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAA < 1:1082719/49‑1 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:2881300/1‑48 AACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAG > 1:3931344/1‑50 AACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAG < 1:961344/50‑1 CTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCT > 1:548590/1‑50 CTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCT > 1:3447183/1‑50 TTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTT > 1:3504537/1‑50 TTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC > 1:1888098/1‑50 TTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC > 1:2927550/1‑50 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC > 1:7624937/1‑50 ATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC < 1:3845462/49‑1 ATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC < 1:5380377/49‑1 ATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC < 1:6654740/49‑1 CTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT > 1:1965008/1‑50 GGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT > 1:1751006/1‑48 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAG > 1:612998/1‑50 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAG < 1:1775628/50‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGA < 1:845245/49‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATG < 1:5863402/48‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT < 1:2307743/47‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGA < 1:8274917/46‑1 TTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGC < 1:6994519/50‑1 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGT > 1:47706/1‑50 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG < 1:1002532/49‑1 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT > 1:6322165/1‑50 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGT < 1:5388727/49‑1 CTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT > 1:7683878/1‑49 CTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT < 1:4137581/49‑1 CTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT < 1:408287/49‑1 CTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT < 1:5302644/49‑1 TCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA > 1:1072595/1‑50 CGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA > 1:428359/1‑49 CGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA > 1:5879236/1‑49 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTAT < 1:6356186/49‑1 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTAT < 1:1190575/49‑1 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATAT > 1:2472065/1‑50 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATAT < 1:3639847/50‑1 TTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATG > 1:796145/1‑50 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGT > 1:4690467/1‑49 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGT > 1:2248169/1‑49 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGT > 1:3808455/1‑49 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGT < 1:4345362/49‑1 CTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAA > 1:164088/1‑50 CTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAA < 1:3485624/50‑1 CTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAA > 1:2783681/1‑50 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAA < 1:3067140/50‑1 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATA < 1:5665865/49‑1 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATA < 1:6654651/49‑1 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATA < 1:247538/49‑1 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATA < 1:7103240/49‑1 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAT < 1:3769677/48‑1 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAT < 1:7752011/48‑1 CCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG < 1:1477298/50‑1 CCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:88936/1‑50 CCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:1133471/1‑50 CCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:3096885/1‑50 CCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG < 1:5694906/50‑1 CGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGC < 1:2624963/50‑1 CGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGC < 1:2550780/50‑1 GAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:6736616/1‑48 GAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:6141995/1‑48 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAG < 1:2657213/50‑1 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAG < 1:4507483/50‑1 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGA < 1:7201432/50‑1 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGA < 1:1946220/50‑1 AGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA < 1:6772563/50‑1 AGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA < 1:23939/50‑1 AGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA < 1:6318412/50‑1 AGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAC > 1:5776150/1‑49 GATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAA < 1:5980030/50‑1 GATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > 1:7176827/1‑49 AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871980‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAA > NC_000913/1873467‑1873515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |