Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 164 [0] | [0] 166 | [dgcJ] | [dgcJ] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1872029 | 0 (0.000) | 157 (1.480) | 73/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ |
Only 100 of 166 total aligned reads displayed.
GGCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAAA > NC_000913/1873418‑1873516 | ggccgcaatcgaactttatctggttttctcgtttcactaaccgaaggaga < 1:350305‑M2/1‑1 (MQ=255) ccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATg < 1:6522901‑M2/3‑1 (MQ=255) cgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGc > 1:7780757‑M2/47‑50 (MQ=255) cgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGc > 1:1275353‑M2/47‑50 (MQ=255) cgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGc < 1:4495043‑M2/4‑1 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 1:3378781‑M2/46‑50 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg < 1:512383‑M2/5‑1 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg < 1:4926382‑M2/5‑1 (MQ=255) caatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 1:4558200‑M2/45‑49 (MQ=255) caatcgaactttatctggttttctcgtttcactaaccgaaggagATGCGt < 1:4210524‑M2/6‑1 (MQ=255) aatcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta > 1:4549249‑M2/44‑50 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat < 1:8100528‑M2/8‑1 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat < 1:4039889‑M2/8‑1 (MQ=255) tcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat > 1:7034701‑M2/42‑49 (MQ=255) tcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat > 1:1895871‑M2/42‑49 (MQ=255) cgaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 1:8100731‑M2/41‑49 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 1:2881300‑M2/40‑48 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaaa < 1:4295632‑M2/11‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaaa < 1:6547937‑M2/11‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaaa < 1:6670647‑M2/11‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaa < 1:1500286‑M2/10‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaa < 1:1082719‑M2/10‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg < 1:961344‑M2/12‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg > 1:2330395‑M2/39‑50 (MQ=255) ctttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCt > 1:1926056‑M2/37‑50 (MQ=255) ctttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCt > 1:548590‑M2/37‑50 (MQ=255) tttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCtt > 1:3482507‑M2/36‑50 (MQ=255) ttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTc > 1:1888098‑M2/35‑50 (MQ=255) ttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTc > 1:2927550‑M2/35‑50 (MQ=255) tatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCtt < 1:5424003‑M2/15‑1 (MQ=255) tatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc > 1:7624937‑M2/34‑50 (MQ=255) atctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc < 1:6654740‑M2/17‑1 (MQ=255) atctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc < 1:4834641‑M2/17‑1 (MQ=255) atctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc < 1:5380377‑M2/17‑1 (MQ=255) ctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:1965008‑M2/31‑50 (MQ=255) tggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:6245218‑M2/30‑49 (MQ=255) tggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:733534‑M2/30‑49 (MQ=255) ggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:1751006‑M2/29‑48 (MQ=255) gttttctcgtttctctaagcgacggagATGCGTATAAAGCTTCCGATGa < 1:3800042‑M2/22‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGa < 1:8274917‑M2/19‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt < 1:474111‑M2/20‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt < 1:2024797‑M2/20‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt < 1:2307743‑M2/20‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt < 1:3767971‑M2/20‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATg < 1:5863402‑M2/21‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGa < 1:1657412‑M2/22‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGa < 1:845245‑M2/22‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAg > 1:612998‑M2/28‑50 (MQ=255) ttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGc < 1:6994519‑M2/24‑1 (MQ=255) ttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCg < 1:1598899‑M2/25‑1 (MQ=255) ttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCg < 1:1002532‑M2/25‑1 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGt < 1:5388727‑M2/26‑1 (MQ=255) ctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt < 1:5302644‑M2/27‑1 (MQ=255) ctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt > 1:7683878‑M2/23‑49 (MQ=255) ctcgcttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt > 1:2850759‑M2/23‑49 (MQ=255) tcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta > 1:1072595‑M2/22‑50 (MQ=255) cgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta > 1:5879236‑M2/21‑49 (MQ=255) cgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta > 1:1430411‑M2/21‑49 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGttt < 1:20075‑M2/28‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTtata > 1:1869792‑M2/20‑50 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTtat < 1:1190575‑M2/30‑1 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat < 1:3639847‑M2/32‑1 (MQ=255) ttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATg > 1:796145‑M2/18‑50 (MQ=255) tcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATg < 1:7167688‑M2/33‑1 (MQ=255) cactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt > 1:3808455‑M2/16‑49 (MQ=255) cactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt < 1:6160770‑M2/34‑1 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTc > 1:4210314‑M2/15‑49 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:6330690‑M2/14‑50 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:2783681‑M2/14‑50 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa < 1:6111345‑M2/37‑1 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa < 1:3485624‑M2/37‑1 (MQ=255) aaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt > 1:3079147‑M2/12‑49 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt < 1:7752011‑M2/38‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATaa < 1:250372‑M2/40‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATa < 1:4010864‑M2/39‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATa < 1:1496353‑M2/39‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATa < 1:247538‑M2/39‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATa < 1:5665865‑M2/39‑1 (MQ=255) ccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:3096885‑M2/10‑50 (MQ=255) ccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:88936‑M2/10‑50 (MQ=255) ccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:1133471‑M2/10‑50 (MQ=255) ccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg < 1:5694906‑M2/41‑1 (MQ=255) ccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg < 1:6738000‑M2/41‑1 (MQ=255) cgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:2596849‑M2/9‑49 (MQ=255) cgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:4122354‑M2/9‑49 (MQ=255) gaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:5273312‑M2/8‑48 (MQ=255) gaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCa < 1:3926580‑M2/43‑1 (MQ=255) aaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg < 1:2657213‑M2/44‑1 (MQ=255) aaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg < 1:4507483‑M2/44‑1 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGa < 1:7201432‑M2/45‑1 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAc > 1:5776150‑M2/3‑49 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa < 1:6772563‑M2/48‑1 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa < 1:6318412‑M2/48‑1 (MQ=255) gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACaa < 1:5980030‑M2/49‑1 (MQ=255) gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACaa < 1:6642614‑M2/49‑1 (MQ=255) gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa > 1:3568087‑M2/2‑49 (MQ=255) gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa > 1:2460205‑M2/2‑49 (MQ=255) gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa > 1:7176827‑M2/2‑49 (MQ=255) atgCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACaaa < 1:2718421/50‑1 (MQ=255) atgCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACaaa < 1:1256957/50‑1 (MQ=255) | GGCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAAA > NC_000913/1873418‑1873516 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |