| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 141 [0] | [0] 139 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 135 (1.280) | 72/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 141 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:5839631/1‑50CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:7502608/50‑1 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:8128728/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:4723125/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:7219642/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:7715727/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:7093330/1‑50 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:2787080/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:261738/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:2543588/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 1:1021082/49‑1 CAATCCTGATTGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA > 1:4995959/1‑50 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA > 1:73529/1‑50 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA > 1:154445/1‑50 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:7341792/50‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC < 1:2242694/50‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC < 1:3616485/50‑1 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 1:3647038/50‑1 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 1:4893766/50‑1 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTC < 1:2975754/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT > 1:4399275/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:6851527/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:1706007/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT > 1:6119427/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA < 1:6084857/49‑1 TGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT > 1:714491/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC < 1:651937/50‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:7631371/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:7280612/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG < 1:6128979/49‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 1:7464635/48‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 1:7450805/48‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 1:3394228/48‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:4220915/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:2863330/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 1:4288816/1‑49 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA > 1:8006955/1‑50 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA > 1:7359180/1‑50 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:3126462/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:6326823/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:4307967/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT < 1:5588263/49‑1 TTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC < 1:7670988/50‑1 TGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC > 1:1222130/1‑50 TGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC > 1:5366601/1‑50 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC < 1:1999396/49‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT > 1:635123/1‑50 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:1974516/50‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:5039727/50‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:7218059/50‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT > 1:7492996/1‑50 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT < 1:4077951/49‑1 CCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG > 1:3377220/1‑50 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:1612202/50‑1 AACTCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:4960408/1‑49 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:5487701/1‑49 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:4780279/1‑49 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA < 1:3798609/50‑1 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA < 1:6180065/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:3769009/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:3876945/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:3994104/1‑49 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:925765/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:5776558/1‑48 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:6048114/1‑48 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:1043306/1‑48 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:5194563/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:6350870/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:1775797/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:1839615/1‑50 TTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:4761355/1‑50 TTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:4124549/1‑50 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:6834712/1‑49 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:2372274/1‑49 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC < 1:930211/48‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG > 1:7123482/1‑50 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG < 1:7961581/50‑1 ATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:2034780/1‑49 ATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:5570986/1‑49 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA > 1:56300/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA < 1:154123/50‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC < 1:2386789/48‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT < 1:3464479/50‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:4695355/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:7041197/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT < 1:6543725/50‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:727415/49‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:5122091/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > 1:8044476/1‑50 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:4476475/1‑50 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:3892763/1‑50 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:2469270/49‑1 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:5247642/1‑49 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:701675/49‑1 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:6132289/49‑1 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > 1:6868612/1‑50 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 1:5094889/49‑1 ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > 1:8194622/1‑50 ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > 1:6249854/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > 1:4471300/1‑50 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |