| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 141 [0] | [0] 139 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 135 (1.280) | 72/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 141 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 | cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:5839631‑M1/1‑50 (MQ=255)cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:7502608‑M1/50‑1 (MQ=255) tGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt > 1:8128728‑M1/1‑49 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:4723125‑M1/1‑48 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:7219642‑M1/1‑48 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:7715727‑M1/1‑48 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:7093330‑M1/1‑48 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttc < 1:2787080‑M1/50‑4 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttc < 1:261738‑M1/50‑4 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttc < 1:2543588‑M1/50‑4 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt < 1:1021082‑M1/49‑3 (MQ=255) cAATCCTGATTGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca > 1:4995959‑M1/1‑43 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca > 1:73529‑M1/1‑43 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca > 1:154445‑M1/1‑43 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca < 1:7341792‑M1/50‑8 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac < 1:2242694‑M1/50‑9 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac < 1:3616485‑M1/50‑9 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact < 1:3647038‑M1/50‑10 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact < 1:4893766‑M1/50‑10 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactc < 1:2975754‑M1/50‑11 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat > 1:4399275‑M1/1‑38 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat < 1:6851527‑M1/50‑13 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat < 1:1706007‑M1/50‑13 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat > 1:6119427‑M1/1‑38 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca < 1:6084857‑M1/49‑12 (MQ=255) tGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt > 1:714491‑M1/1‑37 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc < 1:651937‑M1/50‑16 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:7631371‑M1/1‑35 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:7280612‑M1/1‑35 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 1:6128979‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 1:7464635‑M1/48‑14 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 1:7450805‑M1/48‑14 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 1:3394228‑M1/48‑14 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccac < 1:4220915‑M1/50‑19 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccac < 1:2863330‑M1/50‑19 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 1:4288816‑M1/1‑32 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca > 1:8006955‑M1/1‑31 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca > 1:7359180‑M1/1‑31 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:3126462‑M1/50‑20 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt < 1:6326823‑M1/50‑22 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt < 1:4307967‑M1/50‑22 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat < 1:5588263‑M1/49‑21 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc < 1:7670988‑M1/50‑23 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 1:1222130‑M1/1‑27 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 1:5366601‑M1/1‑27 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc < 1:1999396‑M1/49‑24 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt > 1:635123‑M1/1‑25 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 1:1974516‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 1:5039727‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 1:7218059‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt > 1:7492996‑M1/1‑25 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct < 1:4077951‑M1/49‑25 (MQ=255) cccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg > 1:3377220‑M1/1‑24 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg < 1:1612202‑M1/50‑29 (MQ=255) aaCTCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:4960408‑M1/1‑21 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:5487701‑M1/1‑21 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:4780279‑M1/1‑21 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:3798609‑M1/50‑31 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:6180065‑M1/50‑31 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 1:3769009‑M1/50‑32 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 1:3876945‑M1/50‑32 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:3994104‑M1/1‑19 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtata < 1:925765‑M1/50‑33 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:5776558‑M1/1‑18 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:6048114‑M1/1‑18 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:1043306‑M1/1‑18 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:5194563‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:6350870‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:1775797‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:1839615‑M1/1‑17 (MQ=255) ttACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:4761355‑M1/1‑16 (MQ=255) ttACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:4124549‑M1/1‑16 (MQ=255) tACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:6834712‑M1/1‑15 (MQ=255) tACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:2372274‑M1/1‑15 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc < 1:930211‑M1/48‑35 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagccag > 1:7123482‑M1/1‑13 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagccag < 1:7961581‑M1/50‑38 (MQ=255) aTTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:2034780‑M1/1‑11 (MQ=255) aTTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:5570986‑M1/1‑11 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcca > 1:56300‑M1/1‑10 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcca < 1:154123‑M1/50‑41 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagc < 1:2386789‑M1/48‑39 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt < 1:3464479‑M1/50‑44 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt > 1:4695355‑M1/1‑7 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt > 1:7041197‑M1/1‑7 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt < 1:6543725‑M1/50‑44 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccatt < 1:727415‑M1/49‑43 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccatt < 1:5122091‑M1/49‑43 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:8044476‑M1/1‑6 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:4476475‑M1/1‑5 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:3892763‑M1/1‑5 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:2469270‑M1/49‑46 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt > 1:5247642‑M1/1‑4 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:701675‑M1/49‑46 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:6132289‑M1/49‑46 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta > 1:6868612‑M1/1‑3 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttt < 1:5094889‑M1/49‑47 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:8194622‑M1/1‑2 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:6249854‑M1/1‑2 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:4471300‑M1/1‑1 (MQ=255) | CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |