| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,400,289 | Δ7 bp | coding (2‑8/309 nt) | hfq → | RNA‑binding protein Hfq |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4400289 | 4400295 | 7 | 165 [0] | [0] 168 | hfq | RNA‑binding protein Hfq |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 0 (0.000) | 159 (1.530) | 77/94 | 0.0 | 100% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 0 (0.000) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
Only 100 of 167 total aligned reads displayed.
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:7139588/49‑1CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:5914387/49‑1 AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG > 1:376315/1‑50 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:6070443/1‑50 ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG < 1:3999371/50‑1 ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:4157632/1‑50 CGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:4484633/1‑49 CGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:657844/1‑49 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA < 1:289355/50‑1 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:7870591/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:7630590/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA < 1:4615637/50‑1 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:4687479/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA < 1:613683/50‑1 AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT > 1:848472/1‑50 AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT > 1:428865/1‑50 AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT < 1:151215/50‑1 AGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:6534525/1‑50 AGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT < 1:1684430/50‑1 AGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:4394139/1‑50 GGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT < 1:632656/50‑1 GGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:3767670/1‑50 GGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:745119/1‑50 GTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT < 1:7123679/50‑1 GTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT < 1:3236719/50‑1 GTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:4867047/1‑49 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA < 1:1583290/50‑1 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA < 1:5175775/50‑1 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:746948/1‑49 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:3063286/49‑1 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:1400380/1‑48 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:8007249/1‑48 AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG < 1:6787930/50‑1 AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG < 1:3703547/50‑1 AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:8228889/1‑47 AGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGA < 1:4214287/50‑1 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:4448798/1‑45 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 1:3845853/1‑50 ACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:1552895/1‑50 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:3616672/50‑1 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:6988548/1‑50 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC < 1:5683172/49‑1 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC < 1:4197022/49‑1 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:1209184/1‑50 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:2074185/1‑50 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:5341268/1‑50 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT < 1:3136818/50‑1 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC < 1:65282/50‑1 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC < 1:6867047/50‑1 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:4413895/1‑50 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 1:6485540/1‑50 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 1:3713256/1‑50 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA < 1:5522241/50‑1 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG > 1:6399015/1‑49 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:3878120/1‑50 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA < 1:4812139/50‑1 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA < 1:1784162/50‑1 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC < 1:3930921/50‑1 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC < 1:5593134/50‑1 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG < 1:1207112/50‑1 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:7432595/1‑50 ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:7101155/1‑49 ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:1647513/1‑49 ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:4081909/1‑49 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 1:5459745/1‑50 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGC < 1:194060/49‑1 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT > 1:2506511/1‑50 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT < 1:1983756/50‑1 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAC < 1:5456810/49‑1 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG < 1:2274982/50‑1 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG > 1:1486831/1‑50 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG > 1:3023647/1‑50 tAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC < 1:169359/49‑1 GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC > 1:3542039/1‑50 GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC < 1:4349585/50‑1 AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG < 1:5057670/50‑1 AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG > 1:3052239/1‑50 AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG > 1:2885901/1‑50 AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG > 1:2522663/1‑50 AAAGATAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGT > 1:794894/1‑50 AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGT < 1:1452780/50‑1 AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGT > 1:3612898/1‑50 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC > 1:211041/1‑50 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > 1:343394/1‑50 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG < 1:4767703/50‑1 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG < 1:1380279/50‑1 GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG > 1:4543742/1‑49 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA > 1:5851712/1‑50 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA > 1:2418433/1‑50 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA < 1:7596141/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:4042676/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:6265160/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:1350721/1‑50 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:5848468/1‑50 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:2084114/1‑50 AAGGGGCAATCTTTACAAGATCCGGTCCTGAACGCACTGCGTCGGGAACG > 1:5749618/1‑50 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:1535753/50‑1 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:23781/50‑1 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:2564564/50‑1 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:1915037/50‑1 CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |