BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,400,289	Δ7 bp	coding (2‑8/309 nt)	hfq →	RNA‑binding protein Hfq

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4400289	4400295	7	165 [0]	[0] 168	hfq	RNA‑binding protein Hfq

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4400288	0 (0.000)	159 (1.530)	77/94	0.0	100%	coding (1/309 nt)	hfq	RNA‑binding protein Hfq
*	?	NC_000913	4400296 =	0 (0.000)	159 (1.530)	77/94	0.0	100%	coding (9/309 nt)	hfq	RNA‑binding protein Hfq

Only 100 of 168 total aligned reads displayed.

AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG  >  NC_000913/4400247‑4400345

agaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaag                                                   >  1:376315‑M2/50‑50 (MQ=255)

agaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaag                                                   >  1:5498517‑M2/50‑50 (MQ=255)

 gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg                                                  >  1:4866692‑M2/49‑50 (MQ=255)

 gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg                                                  >  1:6070443‑M2/49‑50 (MQ=255)

     cgaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGc                                               >  1:4484633‑M2/45‑49 (MQ=255)

      gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa                                             >  1:4687479‑M2/44‑50 (MQ=255)

      gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa                                             >  1:7870591‑M2/44‑50 (MQ=255)

      gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa                                             >  1:7630590‑M2/44‑50 (MQ=255)

      gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa                                             <  1:4615637‑M2/7‑1 (MQ=255)

      gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa                                             <  1:289355‑M2/7‑1 (MQ=255)

       aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt                                            >  1:2598050‑M2/43‑50 (MQ=255)

       aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt                                            <  1:151215‑M2/8‑1 (MQ=255)

       aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt                                            >  1:848472‑M2/43‑50 (MQ=255)

         aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt                                          >  1:4394139‑M2/41‑50 (MQ=255)

         aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt                                          <  1:1684430‑M2/10‑1 (MQ=255)

         aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt                                          <  1:6518058‑M2/10‑1 (MQ=255)

         aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt                                          >  1:3763677‑M2/41‑50 (MQ=255)

          ggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt                                         <  1:632656‑M2/11‑1 (MQ=255)

          ggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt                                         >  1:745119‑M2/40‑50 (MQ=255)

          ggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt                                         <  1:3803584‑M2/11‑1 (MQ=255)

           gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCttt                                        <  1:5736472‑M2/12‑1 (MQ=255)

           gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt                                         >  1:4867047‑M2/39‑49 (MQ=255)

            ttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTa                                       <  1:1583290‑M2/13‑1 (MQ=255)

            ttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTa                                       <  1:4143423‑M2/13‑1 (MQ=255)

              caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc                                      <  1:6275807‑M2/14‑1 (MQ=255)

              caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc                                      <  1:4413745‑M2/14‑1 (MQ=255)

              caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc                                      >  1:746948‑M2/36‑49 (MQ=255)

              caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc                                      <  1:3039395‑M2/14‑1 (MQ=255)

              caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc                                      <  1:3063286‑M2/14‑1 (MQ=255)

               aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc                                      >  1:1400380‑M2/35‑48 (MQ=255)

               aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc                                      >  1:8007249‑M2/35‑48 (MQ=255)

                aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc                                      >  1:8228889‑M2/34‑47 (MQ=255)

                aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAg                                   <  1:6787930‑M2/17‑1 (MQ=255)

                aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAg                                   <  1:3703547‑M2/17‑1 (MQ=255)

                 agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGa                                  <  1:4214287‑M2/18‑1 (MQ=255)

                  gtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc                                      >  1:4448798‑M2/32‑45 (MQ=255)

                  gtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGAt                                 <  1:3906876‑M2/19‑1 (MQ=255)

                   tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc                                >  1:7138866‑M2/31‑50 (MQ=255)

                   tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc                                <  1:4284320‑M2/20‑1 (MQ=255)

                    acaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc                               >  1:1552895‑M2/30‑50 (MQ=255)

                     caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc                               <  1:5683172‑M2/21‑1 (MQ=255)

                     caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc                               <  1:4197022‑M2/21‑1 (MQ=255)

                     caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCg                              <  1:3616672‑M2/22‑1 (MQ=255)

                       aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt                            >  1:1209184‑M2/27‑50 (MQ=255)

                       aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt                            <  1:5815685‑M2/24‑1 (MQ=255)

                       aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt                            >  1:2074185‑M2/27‑50 (MQ=255)

                       aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt                            >  1:5341268‑M2/27‑50 (MQ=255)

                       aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt                            <  1:3136818‑M2/24‑1 (MQ=255)

                       aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt                            <  1:3951278‑M2/24‑1 (MQ=255)

                        ataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTc                           <  1:65282‑M2/25‑1 (MQ=255)

                          aagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt                         >  1:3713256‑M2/24‑50 (MQ=255)

                           agcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt                         <  1:6455233‑M2/27‑1 (MQ=255)

                             catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa                      >  1:5420004‑M2/21‑50 (MQ=255)

                             catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa                      <  1:1784162‑M2/30‑1 (MQ=255)

                             catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa                      >  1:3878120‑M2/21‑50 (MQ=255)

                               tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg                    >  1:3167208‑M2/19‑50 (MQ=255)

                               tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg                    >  1:7432595‑M2/19‑50 (MQ=255)

                               tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg                    <  1:1207112‑M2/32‑1 (MQ=255)

                                ataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg                    >  1:1647513‑M2/18‑49 (MQ=255)

                                ataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg                    >  1:7101155‑M2/18‑49 (MQ=255)

                                 taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGc                   <  1:194060‑M2/33‑1 (MQ=255)

                                 taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa                  >  1:5459745‑M2/17‑50 (MQ=255)

                                  aaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc                 >  1:4691701‑M2/16‑50 (MQ=255)

                                   aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc                 <  1:6684433‑M2/35‑1 (MQ=255)

                                   aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc                 <  1:4047932‑M2/35‑1 (MQ=255)

                                   aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt                >  1:6013137‑M2/15‑50 (MQ=255)

                                   aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt                <  1:1983756‑M2/36‑1 (MQ=255)

                                    ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg               <  1:6538691‑M2/37‑1 (MQ=255)

                                    ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg               >  1:1486831‑M2/14‑50 (MQ=255)

                                    ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg               >  1:3023647‑M2/14‑50 (MQ=255)

                                    ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg               <  1:2274982‑M2/37‑1 (MQ=255)

                                     taaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc              <  1:169359‑M2/38‑1 (MQ=255)

                                     gaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc              <  1:4349585‑M2/38‑1 (MQ=255)

                                     gaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc              >  1:3542039‑M2/13‑50 (MQ=255)

                                      aaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg             <  1:5057670‑M2/39‑1 (MQ=255)

                                      aaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg             >  1:2522663‑M2/12‑50 (MQ=255)

                                       aaagatagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt            >  1:794894‑M2/11‑50 (MQ=255)

                                       aaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt            <  1:532709‑M2/40‑1 (MQ=255)

                                       aaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt            <  1:1452780‑M2/40‑1 (MQ=255)

                                        aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc           >  1:211041‑M2/10‑50 (MQ=255)

                                         agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg          <  1:3597980‑M2/42‑1 (MQ=255)

                                         agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg          <  1:5543829‑M2/42‑1 (MQ=255)

                                         agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg          >  1:343394‑M2/9‑50 (MQ=255)

                                         agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg          <  1:6153016‑M2/42‑1 (MQ=255)

                                          gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg         <  1:1380279‑M2/43‑1 (MQ=255)

                                          gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg         <  1:6961694‑M2/43‑1 (MQ=255)

                                          gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg         >  1:7017129‑M2/8‑50 (MQ=255)

                                            gagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGa       <  1:450683‑M2/45‑1 (MQ=255)

                                             agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa      <  1:7596141‑M2/46‑1 (MQ=255)

                                             agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa      >  1:5851712‑M2/5‑50 (MQ=255)

                                             agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa      >  1:2418433‑M2/5‑50 (MQ=255)

                                              gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc     <  1:4042676‑M2/47‑1 (MQ=255)

                                              gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc     >  1:2084114‑M2/4‑50 (MQ=255)

                                              gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc     >  1:1350721‑M2/4‑50 (MQ=255)

                                                aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt   <  1:2564564‑M2/49‑1 (MQ=255)

                                                aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt   <  1:1915037‑M2/49‑1 (MQ=255)

                                                aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt   <  1:1535753‑M2/49‑1 (MQ=255)

                                                aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt   <  1:23781‑M2/49‑1 (MQ=255)

                                                 ggggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACgtg  >  1:480069/1‑50 (MQ=255)

                                                 ggggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACgtg  >  1:3637414/1‑50 (MQ=255)

AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG  >  NC_000913/4400247‑4400345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`