Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 4,400,289 | Δ7 bp | coding (2‑8/309 nt) | hfq → | RNA‑binding protein Hfq |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 4400289 | 4400295 | 7 | 165 [0] | [0] 168 | hfq | RNA‑binding protein Hfq |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 4400288 | 0 (0.000) | 159 (1.530) | 77/94 | 0.0 | 100% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
? | NC_000913 | 4400296 = | 0 (0.000) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq |
Only 100 of 168 total aligned reads displayed.
AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 | agaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaag > 1:376315‑M2/50‑50 (MQ=255) agaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaag > 1:5498517‑M2/50‑50 (MQ=255) gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg > 1:4866692‑M2/49‑50 (MQ=255) gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg > 1:6070443‑M2/49‑50 (MQ=255) cgaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGc > 1:4484633‑M2/45‑49 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa > 1:4687479‑M2/44‑50 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa > 1:7870591‑M2/44‑50 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa > 1:7630590‑M2/44‑50 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa < 1:4615637‑M2/7‑1 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa < 1:289355‑M2/7‑1 (MQ=255) aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt > 1:2598050‑M2/43‑50 (MQ=255) aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt < 1:151215‑M2/8‑1 (MQ=255) aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt > 1:848472‑M2/43‑50 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt > 1:4394139‑M2/41‑50 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt < 1:1684430‑M2/10‑1 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt < 1:6518058‑M2/10‑1 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt > 1:3763677‑M2/41‑50 (MQ=255) ggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt < 1:632656‑M2/11‑1 (MQ=255) ggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt > 1:745119‑M2/40‑50 (MQ=255) ggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt < 1:3803584‑M2/11‑1 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCttt < 1:5736472‑M2/12‑1 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt > 1:4867047‑M2/39‑49 (MQ=255) ttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTa < 1:1583290‑M2/13‑1 (MQ=255) ttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTa < 1:4143423‑M2/13‑1 (MQ=255) caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc < 1:6275807‑M2/14‑1 (MQ=255) caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc < 1:4413745‑M2/14‑1 (MQ=255) caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:746948‑M2/36‑49 (MQ=255) caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc < 1:3039395‑M2/14‑1 (MQ=255) caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc < 1:3063286‑M2/14‑1 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:1400380‑M2/35‑48 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:8007249‑M2/35‑48 (MQ=255) aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:8228889‑M2/34‑47 (MQ=255) aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAg < 1:6787930‑M2/17‑1 (MQ=255) aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAg < 1:3703547‑M2/17‑1 (MQ=255) agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGa < 1:4214287‑M2/18‑1 (MQ=255) gtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:4448798‑M2/32‑45 (MQ=255) gtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGAt < 1:3906876‑M2/19‑1 (MQ=255) tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc > 1:7138866‑M2/31‑50 (MQ=255) tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc < 1:4284320‑M2/20‑1 (MQ=255) acaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc > 1:1552895‑M2/30‑50 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc < 1:5683172‑M2/21‑1 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc < 1:4197022‑M2/21‑1 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCg < 1:3616672‑M2/22‑1 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt > 1:1209184‑M2/27‑50 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt < 1:5815685‑M2/24‑1 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt > 1:2074185‑M2/27‑50 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt > 1:5341268‑M2/27‑50 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt < 1:3136818‑M2/24‑1 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt < 1:3951278‑M2/24‑1 (MQ=255) ataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTc < 1:65282‑M2/25‑1 (MQ=255) aagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt > 1:3713256‑M2/24‑50 (MQ=255) agcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt < 1:6455233‑M2/27‑1 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:5420004‑M2/21‑50 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa < 1:1784162‑M2/30‑1 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:3878120‑M2/21‑50 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:3167208‑M2/19‑50 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:7432595‑M2/19‑50 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg < 1:1207112‑M2/32‑1 (MQ=255) ataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:1647513‑M2/18‑49 (MQ=255) ataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:7101155‑M2/18‑49 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGc < 1:194060‑M2/33‑1 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa > 1:5459745‑M2/17‑50 (MQ=255) aaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc > 1:4691701‑M2/16‑50 (MQ=255) aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc < 1:6684433‑M2/35‑1 (MQ=255) aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc < 1:4047932‑M2/35‑1 (MQ=255) aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt > 1:6013137‑M2/15‑50 (MQ=255) aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt < 1:1983756‑M2/36‑1 (MQ=255) ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg < 1:6538691‑M2/37‑1 (MQ=255) ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg > 1:1486831‑M2/14‑50 (MQ=255) ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg > 1:3023647‑M2/14‑50 (MQ=255) ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg < 1:2274982‑M2/37‑1 (MQ=255) taaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc < 1:169359‑M2/38‑1 (MQ=255) gaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc < 1:4349585‑M2/38‑1 (MQ=255) gaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc > 1:3542039‑M2/13‑50 (MQ=255) aaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg < 1:5057670‑M2/39‑1 (MQ=255) aaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg > 1:2522663‑M2/12‑50 (MQ=255) aaagatagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt > 1:794894‑M2/11‑50 (MQ=255) aaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt < 1:532709‑M2/40‑1 (MQ=255) aaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt < 1:1452780‑M2/40‑1 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 1:211041‑M2/10‑50 (MQ=255) agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg < 1:3597980‑M2/42‑1 (MQ=255) agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg < 1:5543829‑M2/42‑1 (MQ=255) agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:343394‑M2/9‑50 (MQ=255) agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg < 1:6153016‑M2/42‑1 (MQ=255) gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg < 1:1380279‑M2/43‑1 (MQ=255) gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg < 1:6961694‑M2/43‑1 (MQ=255) gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 1:7017129‑M2/8‑50 (MQ=255) gagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGa < 1:450683‑M2/45‑1 (MQ=255) agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa < 1:7596141‑M2/46‑1 (MQ=255) agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa > 1:5851712‑M2/5‑50 (MQ=255) agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa > 1:2418433‑M2/5‑50 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc < 1:4042676‑M2/47‑1 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc > 1:2084114‑M2/4‑50 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc > 1:1350721‑M2/4‑50 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt < 1:2564564‑M2/49‑1 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt < 1:1915037‑M2/49‑1 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt < 1:1535753‑M2/49‑1 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt < 1:23781‑M2/49‑1 (MQ=255) ggggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACgtg > 1:480069/1‑50 (MQ=255) ggggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACgtg > 1:3637414/1‑50 (MQ=255) | AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |