Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,997,112 Δ26,567 bp [tcyN]–[fliR] 32 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1997112 2023678 26567 117 [5] [0] 112 [tcyN]–[fliR] [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19971115 (0.050)107 (0.990) 59/98 0.0 97.7% coding (704/753 nt) tcyN cystine ABC transporter ATP binding subunit
?NC_000913 2023679 = 0 (0.000)intergenic (+1/‑289) fliR/rcsA flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA

Only 100 of 112 total aligned reads displayed.

AATTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACC  >  NC_000913/2023630‑2023728
                                                 |                                                 
tattgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggt                                                   >  1:812833‑M2/50‑50 (MQ=255)
  ttgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggtt                                                  <  1:962238‑M2/2‑1 (MQ=255)
   tgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc                                                >  1:7616914‑M2/47‑50 (MQ=255)
   tgcagcagaaacttctcgaggaactggcgggggcgagggtgctcggTTcc                                                >  1:2669161‑M2/47‑50 (MQ=255)
    gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc                                                <  1:4715829‑M2/4‑1 (MQ=255)
    gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc                                                <  1:7247377‑M2/4‑1 (MQ=255)
    gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc                                                <  1:3930851‑M2/4‑1 (MQ=255)
    gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc                                                <  1:6184478‑M2/4‑1 (MQ=255)
    gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggGTCCg                                               >  1:1198444‑M2/46‑50 (MQ=255)
    gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggGTCCg                                               >  1:1878381‑M2/46‑50 (MQ=255)
     cagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCg                                               <  1:1055520‑M2/5‑1 (MQ=255)
     cagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGt                                              <  1:8238255‑M2/6‑1 (MQ=255)
      agcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTa                                             <  1:5009071‑M2/7‑1 (MQ=255)
       gcataaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTaa                                            <  1:6537682‑M2/8‑1 (MQ=255)
       gcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTaa                                            <  1:6227208‑M2/8‑1 (MQ=255)
        cagaaacttctcgaggaactggcgggtgcgaggctggtcggTTTCGGAAc                                           >  1:1195350‑M2/42‑50 (MQ=255)
        cagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAAc                                           <  1:294788‑M2/9‑1 (MQ=255)
        cagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAAc                                           <  1:6938235‑M2/9‑1 (MQ=255)
         agaaacttctcgaggaactggcgggtgcggggctgctcggTTCCCTAACg                                          >  1:6081000‑M2/41‑50 (MQ=255)
         agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg                                          <  1:3227789‑M2/10‑1 (MQ=255)
         agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg                                          <  1:1960906‑M2/10‑1 (MQ=255)
         agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg                                          <  1:5486487‑M2/10‑1 (MQ=255)
                tctcgaggaactggcgggtgcgaggctgctcggTTTCGTAACGTTTATCa                                   >  1:7235525‑M2/34‑50 (MQ=255)
                tctcgaggaactggcgggtgcgaggctgctcggTTCCGTAAAGTTTATCa                                   >  1:4002984‑M2/34‑50 (MQ=255)
                 ctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATc                                    <  1:22466‑M2/16‑1 (MQ=255)
                 ctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATc                                    <  1:1242889‑M2/16‑1 (MQ=255)
                 ctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATc                                    <  1:7821269‑M2/16‑1 (MQ=255)
                    gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCAt                                  <  1:2898640‑M2/18‑1 (MQ=255)
                    gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGtt                               <  1:4612766‑M2/21‑1 (MQ=255)
                    gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGtt                               <  1:4875251‑M2/21‑1 (MQ=255)
                    gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGt                                <  1:7894487‑M2/20‑1 (MQ=255)
                    gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTAGCATGt                                <  1:4204292‑M2/20‑1 (MQ=255)
                     aggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTa                              <  1:850783‑M2/22‑1 (MQ=255)
                      ggaactgtcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTAt                             >  1:7805183‑M2/28‑50 (MQ=255)
                      ggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTAt                             <  1:5713528‑M2/23‑1 (MQ=255)
                      ggaaccggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTAt                             <  1:403654‑M2/23‑1 (MQ=255)
                        aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc                           <  1:4609915‑M2/25‑1 (MQ=255)
                        aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc                           <  1:5289632‑M2/25‑1 (MQ=255)
                        aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc                           >  1:7973318‑M2/26‑50 (MQ=255)
                        aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc                           <  1:2001091‑M2/25‑1 (MQ=255)
                        aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc                           <  1:1604500‑M2/25‑1 (MQ=255)
                          ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt                          >  1:1943621‑M2/24‑49 (MQ=255)
                          ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTa                         <  1:1067381‑M2/27‑1 (MQ=255)
                          ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTa                         <  1:6965466‑M2/27‑1 (MQ=255)
                            ggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       >  1:809180‑M2/22‑50 (MQ=255)
                            ggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       >  1:2362104‑M2/22‑50 (MQ=255)
                            ggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       >  1:4747334‑M2/22‑50 (MQ=255)
                             gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTaa                        <  1:8313872‑M2/28‑1 (MQ=255)
                             gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAgg                      <  1:3678492‑M2/30‑1 (MQ=255)
                             gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAgg                      <  1:5429276‑M2/30‑1 (MQ=255)
                             gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       <  1:866765‑M2/29‑1 (MQ=255)
                             gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       <  1:7208421‑M2/29‑1 (MQ=255)
                             gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       <  1:3834540‑M2/29‑1 (MQ=255)
                             gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       <  1:1680762‑M2/29‑1 (MQ=255)
                              cgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGa                     >  1:4919129‑M2/20‑50 (MQ=255)
                              cgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGa                     <  1:3205472‑M2/31‑1 (MQ=255)
                               gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt                    >  1:4560305‑M2/19‑50 (MQ=255)
                               gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt                    <  1:7654230‑M2/32‑1 (MQ=255)
                                ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt                   <  1:4873329‑M2/33‑1 (MQ=255)
                                 gtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTa                  >  1:4563662‑M2/17‑50 (MQ=255)
                                 gtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTa                  >  1:4138480‑M2/17‑50 (MQ=255)
                                  tgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTAt                 <  1:7503532‑M2/35‑1 (MQ=255)
                                  tgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTAt                 <  1:541095‑M2/35‑1 (MQ=255)
                                   gcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc                >  1:1017184‑M2/15‑50 (MQ=255)
                                   gcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc                >  1:37863‑M2/15‑50 (MQ=255)
                                    cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc                <  1:6547551‑M2/36‑1 (MQ=255)
                                    cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc                <  1:6536558‑M2/36‑1 (MQ=255)
                                     gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               >  1:5803212‑M2/13‑49 (MQ=255)
                                     gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg              <  1:3761424‑M2/38‑1 (MQ=255)
                                      aggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGa             <  1:3158912‑M2/39‑1 (MQ=255)
                                        gctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa           <  1:4994053‑M2/41‑1 (MQ=255)
                                        gctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaa            >  1:5349394‑M2/10‑49 (MQ=255)
                                         ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaa          <  1:503116‑M2/42‑1 (MQ=255)
                                         ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaa          <  1:4861827‑M2/42‑1 (MQ=255)
                                         ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa           >  1:5962192‑M2/9‑49 (MQ=255)
                                           gctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa         >  1:860337‑M2/7‑49 (MQ=255)
                                           gctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa         >  1:7256862‑M2/7‑49 (MQ=255)
                                            ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa         <  1:100314‑M2/43‑1 (MQ=255)
                                            ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa         <  1:3836966‑M2/43‑1 (MQ=255)
                                            ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaata       <  1:4317018‑M2/45‑1 (MQ=255)
                                            ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaat        <  1:475963‑M2/44‑1 (MQ=255)
                                            ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaat        >  1:5445956‑M2/6‑49 (MQ=255)
                                              cggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa      >  1:1248720‑M2/4‑49 (MQ=255)
                                              cggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa      >  1:2555337‑M2/4‑49 (MQ=255)
                                              cggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa      >  1:3095589‑M2/4‑49 (MQ=255)
                                              cggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa      >  1:3400767‑M2/4‑49 (MQ=255)
                                               ggTTCCGTATCGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa      <  1:6539273‑M2/46‑1 (MQ=255)
                                               ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataat     <  1:1905207‑M2/47‑1 (MQ=255)
                                               ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata    >  1:2707530‑M2/3‑50 (MQ=255)
                                               ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata    <  1:486570‑M2/48‑1 (MQ=255)
                                                gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc   >  1:32923‑M2/2‑50 (MQ=255)
                                                gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc   <  1:7899800‑M2/49‑1 (MQ=255)
                                                gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc   >  1:5093781‑M2/2‑50 (MQ=255)
                                                gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc   <  1:2167172‑M2/49‑1 (MQ=255)
                                                gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc   >  1:1729676‑M2/2‑50 (MQ=255)
                                                 ttCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAcc  >  1:7677403/1‑50 (MQ=255)
                                                 ttCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAcc  >  1:7643024/1‑50 (MQ=255)
                                                 ttCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAcc  <  1:4604964/50‑1 (MQ=255)
                                                 ttCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAcc  <  1:6912659/50‑1 (MQ=255)
                                                 ttCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAcc  >  1:116375/1‑50 (MQ=255)
                                                 |                                                 
AATTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACC  >  NC_000913/2023630‑2023728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.