BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	332,366	Δ44,951 bp		pdeL–yaiL	39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	332366	377316	44951	162 [0]	[0] 162	pdeL–yaiL	pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 332365	0 (0.000)	159 (1.470)	77/98	0.0	100%	intergenic (+489/‑6)	yahV/pdeL	protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL
*	?	NC_000913	377317 =	NA (NA)	159 (1.470)	77/98	0.0	100%	intergenic (+6/+218)	yaiL/frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB

Only 100 of 162 total aligned reads displayed.

GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC  >  NC_000913/332316‑332414

ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg                                                   >  1:6835291/1‑50 (MQ=255)

 gAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGg                                                  <  1:426600‑M1/50‑2 (MQ=255)

  aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga                                                 <  1:6206585‑M1/50‑3 (MQ=255)

   aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat                                                <  1:6504717‑M1/50‑4 (MQ=255)

   aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat                                                <  1:4069088‑M1/50‑4 (MQ=255)

   aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga                                                 >  1:2962021‑M1/1‑47 (MQ=255)

    tCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgata                                               <  1:1853610‑M1/50‑5 (MQ=255)

     cGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat                                                >  1:6920488‑M1/1‑45 (MQ=255)

     cGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat                                                >  1:2973464‑M1/1‑45 (MQ=255)

     cGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat                                                >  1:2846099‑M1/1‑45 (MQ=255)

      gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag                                             <  1:1276582‑M1/50‑7 (MQ=255)

      gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag                                             <  1:2557111‑M1/50‑7 (MQ=255)

      gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataa                                              <  1:4444520‑M1/49‑6 (MQ=255)

      gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataa                                              <  1:5969850‑M1/49‑6 (MQ=255)

        cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc                                           <  1:5602249‑M1/50‑9 (MQ=255)

        cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc                                           <  1:5164423‑M1/50‑9 (MQ=255)

        cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc                                           <  1:8130853‑M1/50‑9 (MQ=255)

        cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc                                           >  1:6298153‑M1/1‑42 (MQ=255)

         aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg                                          <  1:3774882‑M1/50‑10 (MQ=255)

         aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg                                          >  1:5991051‑M1/1‑41 (MQ=255)

          ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt                                         <  1:1747488‑M1/50‑11 (MQ=255)

          ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt                                         <  1:6929127‑M1/50‑11 (MQ=255)

           gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg                                        <  1:6363531‑M1/50‑12 (MQ=255)

           gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg                                        <  1:4259531‑M1/50‑12 (MQ=255)

           gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg                                        <  1:4185614‑M1/50‑12 (MQ=255)

            tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc                                       <  1:6438908‑M1/50‑13 (MQ=255)

            tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc                                       >  1:5424826‑M1/1‑38 (MQ=255)

            tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc                                       <  1:7335493‑M1/50‑13 (MQ=255)

             aaTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg                                      >  1:2342940‑M1/1‑37 (MQ=255)

              aTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgc                                     <  1:4676538‑M1/50‑15 (MQ=255)

              aTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg                                      <  1:1421588‑M1/49‑14 (MQ=255)

              aTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg                                      <  1:5084127‑M1/49‑14 (MQ=255)

               tCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgca                                    <  1:6188231‑M1/50‑16 (MQ=255)

               tCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgca                                    <  1:5939099‑M1/50‑16 (MQ=255)

               tCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgca                                    <  1:4967968‑M1/50‑16 (MQ=255)

                 aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcaga                                  <  1:8003615‑M1/50‑18 (MQ=255)

                 aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcag                                   <  1:1893933‑M1/49‑17 (MQ=255)

                  cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat                                 <  1:386510‑M1/50‑19 (MQ=255)

                  cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat                                 >  1:3903021‑M1/1‑32 (MQ=255)

                  cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat                                 <  1:5163421‑M1/50‑19 (MQ=255)

                    cATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc                               >  1:5339954‑M1/1‑30 (MQ=255)

                     aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc                               <  1:6560466‑M1/49‑21 (MQ=255)

                     aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatg                                <  1:5646282‑M1/48‑20 (MQ=255)

                     aTACTGAACAGCGAGAAAAGATAAAGGTGgataagtcgtgcgcagatgcc                              <  1:2135350‑M1/50‑22 (MQ=255)

                       aCTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct                             >  1:3318192‑M1/1‑27 (MQ=255)

                       aCTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct                             >  1:2694303‑M1/1‑27 (MQ=255)

                        cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg                            <  1:5352630‑M1/49‑24 (MQ=255)

                         tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat                          >  1:2650690‑M1/1‑25 (MQ=255)

                           aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg                         <  1:584226‑M1/49‑27 (MQ=255)

                           aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat                          <  1:7165376‑M1/48‑26 (MQ=255)

                           aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat                          <  1:2451631‑M1/48‑26 (MQ=255)

                           aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat                          <  1:8112608‑M1/48‑26 (MQ=255)

                           aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat                          <  1:2061465‑M1/48‑26 (MQ=255)

                           aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat                          <  1:7730706‑M1/48‑26 (MQ=255)

                            aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcg                       <  1:4704239‑M1/50‑29 (MQ=255)

                             cAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcga                      >  1:5618827‑M1/1‑21 (MQ=255)

                              aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac                     <  1:5060001‑M1/50‑31 (MQ=255)

                              aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac                     <  1:7815483‑M1/50‑31 (MQ=255)

                               gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg                    <  1:877512‑M1/50‑32 (MQ=255)

                                cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc                   <  1:1666764‑M1/50‑33 (MQ=255)

                                cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc                   >  1:7754108‑M1/1‑18 (MQ=255)

                                cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc                   <  1:2843689‑M1/50‑33 (MQ=255)

                                cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc                   >  1:7560257‑M1/1‑18 (MQ=255)

                                 gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct                  <  1:8050818‑M1/50‑34 (MQ=255)

                                  aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta                 <  1:1525721‑M1/50‑35 (MQ=255)

                                   tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat                <  1:8314289‑M1/50‑36 (MQ=255)

                                   tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat                <  1:2541286‑M1/50‑36 (MQ=255)

                                   tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat                >  1:6265093‑M1/1‑15 (MQ=255)

                                    aaaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg               >  1:5500465‑M1/1‑14 (MQ=255)

                                    aaaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg               >  1:3501682‑M1/1‑14 (MQ=255)

                                     aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc              <  1:1520804‑M1/50‑38 (MQ=255)

                                     aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc              <  1:5521813‑M1/50‑38 (MQ=255)

                                     aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg               <  1:2204310‑M1/49‑37 (MQ=255)

                                      aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg             >  1:1448023‑M1/1‑12 (MQ=255)

                                      aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg             >  1:2190426‑M1/1‑12 (MQ=255)

                                       aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc            >  1:933201‑M1/1‑11 (MQ=255)

                                       aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc            <  1:8121738‑M1/50‑40 (MQ=255)

                                       aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc            <  1:6665592‑M1/50‑40 (MQ=255)

                                       aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc            <  1:407943‑M1/50‑40 (MQ=255)

                                       aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc            <  1:3890517‑M1/50‑40 (MQ=255)

                                         aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt          <  1:1021116‑M1/50‑42 (MQ=255)

                                         aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt          >  1:8056673‑M1/1‑9 (MQ=255)

                                           aaaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct        >  1:2446686‑M1/1‑7 (MQ=255)

                                            aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt       <  1:1854567‑M1/50‑45 (MQ=255)

                                            aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt       <  1:204881‑M1/50‑45 (MQ=255)

                                            aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct        >  1:2922594‑M1/1‑6 (MQ=255)

                                            aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct        <  1:1713813‑M1/49‑44 (MQ=255)

                                            aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct        <  1:196861‑M1/49‑44 (MQ=255)

                                            aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct        <  1:2735217‑M1/49‑44 (MQ=255)

                                              ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat     >  1:7442450‑M1/1‑4 (MQ=255)

                                              ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat     <  1:3970005‑M1/50‑47 (MQ=255)

                                               gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatc    <  1:2023084‑M1/50‑48 (MQ=255)

                                               gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatc    <  1:3143030‑M1/50‑48 (MQ=255)

                                                tGgataagtcgtgctcagatgcctgatgcgacgctatgcgcgtcttat     >  1:3019179‑M1/1‑2 (MQ=255)

                                                tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatca   <  1:3370036‑M1/50‑49 (MQ=255)

                                                tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatca   <  1:106739‑M1/50‑49 (MQ=255)

                                                tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat     >  1:7696644‑M1/1‑2 (MQ=255)

                                                tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat     >  1:5556181‑M1/1‑2 (MQ=255)

                                                 ggataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatcag  >  1:5760818‑M1/1‑1 (MQ=255)

                                                 ggataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatcag  >  1:3041475‑M1/1‑1 (MQ=255)

GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC  >  NC_000913/332316‑332414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`