Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 332,366 Δ44,951 bp pdeL–yaiL 39 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 332366 377316 44951 162 [0] [0] 162 pdeL–yaiL pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3323650 (0.000)159 (1.470) 77/98 0.0 100% intergenic (+489/‑6) yahV/pdeL protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL
?NC_000913 377317 = NA (NA)intergenic (+6/+218) yaiL/frmB DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB

Only 100 of 162 total aligned reads displayed.

CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG  >  NC_000913/377269‑377366
                                                |                                                 
aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa                                                  <  1:6206585‑M2/2‑1 (MQ=255)
 atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa                                                  >  1:2962021‑M2/48‑49 (MQ=255)
 atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa                                                  >  1:7836832‑M2/48‑49 (MQ=255)
 atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt                                                 <  1:8047457‑M2/3‑1 (MQ=255)
 atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt                                                 <  1:6504717‑M2/3‑1 (MQ=255)
 atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt                                                 <  1:4069088‑M2/3‑1 (MQ=255)
  tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa                                                <  1:5131075‑M2/4‑1 (MQ=255)
   cgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt                                                 >  1:399057‑M2/46‑48 (MQ=255)
   cgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt                                                 >  1:253911‑M2/46‑48 (MQ=255)
    gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa                                               <  1:8157453‑M2/5‑1 (MQ=255)
    gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa                                               <  1:5969850‑M2/5‑1 (MQ=255)
    gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa                                               <  1:4444520‑M2/5‑1 (MQ=255)
    gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg                                              <  1:1276582‑M2/6‑1 (MQ=255)
    gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg                                              <  1:7543839‑M2/6‑1 (MQ=255)
    gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg                                              >  1:7730218‑M2/45‑50 (MQ=255)
     acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt                                             >  1:8077341‑M2/44‑50 (MQ=255)
      caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc                                            <  1:5164423‑M2/8‑1 (MQ=255)
      caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc                                            >  1:6298153‑M2/43‑50 (MQ=255)
       aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg                                           >  1:5991051‑M2/42‑50 (MQ=255)
       aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg                                           <  1:3774882‑M2/9‑1 (MQ=255)
       aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg                                           <  1:1806671‑M2/9‑1 (MQ=255)
        ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt                                          <  1:6929127‑M2/10‑1 (MQ=255)
         gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg                                         <  1:7745518‑M2/11‑1 (MQ=255)
         gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg                                         <  1:6363531‑M2/11‑1 (MQ=255)
         gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg                                         <  1:4185614‑M2/11‑1 (MQ=255)
         gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg                                         <  1:4259531‑M2/11‑1 (MQ=255)
          taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc                                        <  1:6438908‑M2/12‑1 (MQ=255)
          taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc                                        <  1:4269277‑M2/12‑1 (MQ=255)
           aatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg                                       >  1:2342940‑M2/38‑50 (MQ=255)
            atcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcgc                                      <  1:4676538‑M2/14‑1 (MQ=255)
            atcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcgc                                      <  1:5070095‑M2/14‑1 (MQ=255)
            atcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg                                       <  1:1421588‑M2/13‑1 (MQ=255)
             tcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCa                                     <  1:5939099‑M2/15‑1 (MQ=255)
             tcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCa                                     <  1:6188231‑M2/15‑1 (MQ=255)
               actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAg                                    <  1:1893933‑M2/16‑1 (MQ=255)
                ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt                                  <  1:4882710‑M2/18‑1 (MQ=255)
                ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt                                  >  1:3014519‑M2/33‑50 (MQ=255)
                ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt                                  >  1:6962661‑M2/33‑50 (MQ=255)
                ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt                                  >  1:3903021‑M2/33‑50 (MQ=255)
                   atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGcc                               >  1:2342327‑M2/30‑50 (MQ=255)
                   atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc                                <  1:6560466‑M2/20‑1 (MQ=255)
                   atactgaacagcgagaaaagataaaggtgGATAAGTCGTGCGCAGATGcc                               <  1:2135350‑M2/21‑1 (MQ=255)
                     actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt                              >  1:3318192‑M2/28‑49 (MQ=255)
                     actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt                              >  1:2694303‑M2/28‑49 (MQ=255)
                     actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt                              >  1:2089224‑M2/28‑49 (MQ=255)
                      ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTg                             <  1:5352630‑M2/23‑1 (MQ=255)
                       tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt                           >  1:2921892‑M2/26‑50 (MQ=255)
                       tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt                           >  1:2650690‑M2/26‑50 (MQ=255)
                         aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg                          <  1:7312679‑M2/26‑1 (MQ=255)
                         aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg                          <  1:584226‑M2/26‑1 (MQ=255)
                         aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc                         >  1:5535463‑M2/24‑50 (MQ=255)
                         aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc                         <  1:5381112‑M2/27‑1 (MQ=255)
                          acagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCg                        <  1:4704239‑M2/28‑1 (MQ=255)
                          acagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCg                        <  1:2622849‑M2/28‑1 (MQ=255)
                           cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa                       >  1:5618827‑M2/22‑50 (MQ=255)
                           cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa                       >  1:918610‑M2/22‑50 (MQ=255)
                            agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc                      <  1:1559463‑M2/30‑1 (MQ=255)
                            agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc                      <  1:5589599‑M2/30‑1 (MQ=255)
                            agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc                      <  1:1718176‑M2/30‑1 (MQ=255)
                            agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc                      <  1:7815483‑M2/30‑1 (MQ=255)
                            agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc                      <  1:5060001‑M2/30‑1 (MQ=255)
                            agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc                      >  1:4166951‑M2/21‑50 (MQ=255)
                             gcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg                     <  1:877512‑M2/31‑1 (MQ=255)
                              cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc                    <  1:2843689‑M2/32‑1 (MQ=255)
                                ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa                  <  1:1525721‑M2/34‑1 (MQ=255)
                                 taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt                 >  1:6265093‑M2/16‑50 (MQ=255)
                                 taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt                 <  1:2541286‑M2/35‑1 (MQ=255)
                                  aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg                >  1:3501682‑M2/15‑50 (MQ=255)
                                   aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc               <  1:5521813‑M2/37‑1 (MQ=255)
                                    aagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcg              >  1:8126511‑M2/13‑50 (MQ=255)
                                    aagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcg              >  1:2190426‑M2/13‑50 (MQ=255)
                                     agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc             <  1:8121738‑M2/39‑1 (MQ=255)
                                     agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc             >  1:5169959‑M2/12‑50 (MQ=255)
                                     agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc             <  1:3890517‑M2/39‑1 (MQ=255)
                                     agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc             <  1:6665592‑M2/39‑1 (MQ=255)
                                      gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg            <  1:5625585‑M2/40‑1 (MQ=255)
                                      gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg            >  1:1473‑M2/11‑50 (MQ=255)
                                       ataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt           >  1:8056673‑M2/10‑50 (MQ=255)
                                       ataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt           <  1:1021116‑M2/41‑1 (MQ=255)
                                        taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc          >  1:3171999‑M2/9‑50 (MQ=255)
                                         aaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt         >  1:3405459‑M2/8‑50 (MQ=255)
                                         aaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt         >  1:2446686‑M2/8‑50 (MQ=255)
                                          aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt        <  1:204881‑M2/44‑1 (MQ=255)
                                          aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt        <  1:1854567‑M2/44‑1 (MQ=255)
                                          aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt         >  1:3875924‑M2/7‑49 (MQ=255)
                                          aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt         >  1:2922594‑M2/7‑49 (MQ=255)
                                          aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt         <  1:196861‑M2/43‑1 (MQ=255)
                                          aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt         <  1:1713813‑M2/43‑1 (MQ=255)
                                           aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa       >  1:6902018‑M2/6‑50 (MQ=255)
                                            ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt      >  1:7442450‑M2/5‑50 (MQ=255)
                                              tgGATAAGTCGTGCTCAGATGCCTGATGCGACGCTATGCGCGTCTTAt      >  1:3019179‑M2/3‑48 (MQ=255)
                                              tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt      >  1:7696644‑M2/3‑48 (MQ=255)
                                              tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa    <  1:106739‑M2/48‑1 (MQ=255)
                                              tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa    <  1:2809916‑M2/48‑1 (MQ=255)
                                               gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg   >  1:5760818‑M2/2‑50 (MQ=255)
                                               gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg   >  1:5426216‑M2/2‑50 (MQ=255)
                                               gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg   >  1:3041475‑M2/2‑50 (MQ=255)
                                               gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg   >  1:2025460‑M2/2‑50 (MQ=255)
                                                gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg   <  1:5761697/49‑1 (MQ=255)
                                                gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg   <  1:943555/49‑1 (MQ=255)
                                                |                                                 
CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG  >  NC_000913/377269‑377366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑