BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,601,201	Δ13,595 bp		[hyfA]–focB	[hyfA], hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2601201	2614795	13595	124 [0]	[0] 120	[hyfA]–focB	[hyfA],hyfB,hyfC,hyfD,hyfE,hyfF,hyfG,hyfH,hyfI,hyfJ,hyfR,focB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2601200	0 (0.000)	119 (1.100)	66/98	0.0	100%	intergenic (+252/‑1)	bcp/hyfA	thiol peroxidase/hydrogenase 4 component A
*	?	NC_000913	2614796 =	0 (0.000)	119 (1.100)	66/98	0.0	100%	intergenic (+14/+24)	focB/yfgO	putative formate transporter/putative transporter YfgO

Only 100 of 124 total aligned reads displayed.

CTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACATGAACCGCTTTGTGGTGGCCGAACCACTGTGGTGTACAGGATGTAATA  >  NC_000913/2601151‑2601249

cTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGAc                                                   <  1:5459484/50‑1 (MQ=255)

cTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGAc                                                   <  1:7199854/50‑1 (MQ=255)

cTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGAc                                                   >  1:7265696/1‑50 (MQ=255)

cTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGAc                                                   >  1:1043791/1‑50 (MQ=255)

 tttATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACc                                                  >  1:4575547‑M1/1‑49 (MQ=255)

  ttATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACc                                                  >  1:5241030‑M1/1‑48 (MQ=255)

   tATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcg                                                 >  1:2135044‑M1/1‑47 (MQ=255)

    aTGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcga                                                >  1:4734644‑M1/1‑46 (MQ=255)

     tGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaa                                              <  1:446606‑M1/50‑6 (MQ=255)

       cAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaaca                                            <  1:4966470‑M1/50‑8 (MQ=255)

       cAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaaca                                            <  1:7837708‑M1/50‑8 (MQ=255)

       cAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaaca                                            <  1:1968661‑M1/50‑8 (MQ=255)

       cAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaac                                             <  1:2420019‑M1/49‑7 (MQ=255)

       cAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaac                                             <  1:7174979‑M1/49‑7 (MQ=255)

       cAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaac                                             <  1:569074‑M1/49‑7 (MQ=255)

        aaTATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacag                                           <  1:772668‑M1/50‑9 (MQ=255)

        aaTATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacag                                           <  1:4989773‑M1/50‑9 (MQ=255)

         atatGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagt                                          >  1:3579033‑M1/1‑41 (MQ=255)

         atatGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagt                                          <  1:3330988‑M1/50‑10 (MQ=255)

         atatGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagt                                          <  1:3187534‑M1/50‑10 (MQ=255)

         atatGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagt                                          >  1:1426674‑M1/1‑41 (MQ=255)

          tatGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagtt                                         <  1:1868414‑M1/50‑11 (MQ=255)

          tatGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagtt                                         <  1:7417900‑M1/50‑11 (MQ=255)

           atGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttc                                        >  1:5913153‑M1/1‑39 (MQ=255)

           atGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttc                                        >  1:7587548‑M1/1‑39 (MQ=255)

           atGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttc                                        >  1:3994648‑M1/1‑39 (MQ=255)

            tGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcg                                       >  1:2831563‑M1/1‑38 (MQ=255)

            tGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttc                                        <  1:6992792‑M1/49‑12 (MQ=255)

            tGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttc                                        <  1:1407826‑M1/49‑12 (MQ=255)

            tGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttc                                        <  1:7809795‑M1/49‑12 (MQ=255)

            tGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttc                                        <  1:2962372‑M1/49‑12 (MQ=255)

             gAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgt                                      >  1:2093419‑M1/1‑37 (MQ=255)

             gAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgt                                      >  1:1054324‑M1/1‑37 (MQ=255)

              aaaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtc                                     >  1:4023754‑M1/1‑36 (MQ=255)

              aaaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtc                                     >  1:4451210‑M1/1‑36 (MQ=255)

              aaaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtc                                     <  1:1741252‑M1/50‑15 (MQ=255)

              aaaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgt                                      <  1:4959728‑M1/49‑14 (MQ=255)

              aaaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgt                                      <  1:2634510‑M1/49‑14 (MQ=255)

               aaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcg                                    >  1:4257024‑M1/1‑35 (MQ=255)

                aTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgg                                   <  1:5259757‑M1/50‑17 (MQ=255)

                aTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgg                                   <  1:8152050‑M1/50‑17 (MQ=255)

                aTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgg                                   >  1:1519472‑M1/1‑34 (MQ=255)

                 tGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcggg                                  <  1:6459045‑M1/50‑18 (MQ=255)

                 tGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcggg                                  <  1:164217‑M1/50‑18 (MQ=255)

                 tGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcggg                                  >  1:4300197‑M1/1‑33 (MQ=255)

                  gCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggc                                 >  1:7628606‑M1/1‑32 (MQ=255)

                   cAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggct                                <  1:4930383‑M1/50‑20 (MQ=255)

                   cAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggc                                 <  1:8221409‑M1/49‑19 (MQ=255)

                    aaTGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggct                                >  1:1674296‑M1/1‑30 (MQ=255)

                    aaTGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggct                                >  1:5888054‑M1/1‑30 (MQ=255)

                      tGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaa                             <  1:7526256‑M1/50‑23 (MQ=255)

                      tGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctg                               >  1:2974942‑M1/1‑28 (MQ=255)

                      tGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctg                               >  1:8138135‑M1/1‑28 (MQ=255)

                        tttCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaaga                           <  1:4229067‑M1/50‑25 (MQ=255)

                        tttCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaaga                           <  1:5801979‑M1/50‑25 (MQ=255)

                        tttCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaag                            <  1:2672511‑M1/49‑24 (MQ=255)

                        tttCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaag                            <  1:5714904‑M1/49‑24 (MQ=255)

                        tttCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctg                               >  1:1804204‑M1/1‑26 (MQ=255)

                          tCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagat                          >  1:4517867‑M1/1‑24 (MQ=255)

                          tCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagat                          >  1:5964073‑M1/1‑24 (MQ=255)

                          tCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagat                          >  1:3495814‑M1/1‑24 (MQ=255)

                           cATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagatta                        >  1:1668398‑M1/1‑23 (MQ=255)

                            atatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattat                       <  1:4612950‑M1/50‑29 (MQ=255)

                            atatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattat                       >  1:4540284‑M1/1‑22 (MQ=255)

                            atatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattat                       >  1:7910665‑M1/1‑22 (MQ=255)

                            atatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagatta                        <  1:344998‑M1/49‑28 (MQ=255)

                            atatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagatta                        <  1:5584157‑M1/49‑28 (MQ=255)

                             tatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattatt                      >  1:6935301‑M1/1‑21 (MQ=255)

                               tCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattc                     <  1:1152680‑M1/49‑31 (MQ=255)

                                 aTTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttg                  <  1:4586269‑M1/50‑34 (MQ=255)

                                 aTTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttg                  <  1:6379618‑M1/50‑34 (MQ=255)

                                 aTTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttg                  >  1:2669865‑M1/1‑17 (MQ=255)

                                 aTTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattctt                   <  1:3845828‑M1/49‑33 (MQ=255)

                                 aTTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcgt                   <  1:2659858‑M1/49‑33 (MQ=255)

                                  ttttCAAGGAGCGGACcgaaacagttcgtcgggctgaagattattcttgc                 <  1:6545017‑M1/50‑35 (MQ=255)

                                  ttttCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgc                 >  1:2271170‑M1/1‑16 (MQ=255)

                                  ttttCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgc                 >  1:1960588‑M1/1‑16 (MQ=255)

                                   tttCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcg                >  1:2258494‑M1/1‑15 (MQ=255)

                                     tCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgc               <  1:7320463‑M1/49‑37 (MQ=255)

                                      cAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcga             >  1:1147410‑M1/1‑12 (MQ=255)

                                      cAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcga             >  1:229487‑M1/1‑12 (MQ=255)

                                       aaGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgat            <  1:8171734‑M1/50‑40 (MQ=255)

                                        aGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgatt           >  1:7090692‑M1/1‑10 (MQ=255)

                                        aGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgatt           <  1:737039‑M1/50‑41 (MQ=255)

                                        aGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgatt           <  1:3830384‑M1/50‑41 (MQ=255)

                                         ggAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgattt          <  1:3299875‑M1/50‑42 (MQ=255)

                                          gAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgatttg         <  1:4517669‑M1/50‑43 (MQ=255)

                                           aGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgatttgc        >  1:5151951‑M1/1‑7 (MQ=255)

                                              cgaccgaaacagttcgtcgggctgaagattattcttgcgcgatttgccca     >  1:7402306‑M1/1‑4 (MQ=255)

                                              cgaccgaaacagttcgtcgggctgaagattattcttgcgcgatttgccca     >  1:134078‑M1/1‑4 (MQ=255)

                                               gaccgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccat    <  1:2772320‑M1/50‑48 (MQ=255)

                                               gaccgaaacaggtcgtcgggctgaagattattcttgcgcgatttgcccat    >  1:2539099‑M1/1‑3 (MQ=255)

                                                accgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccatc   <  1:322017‑M1/50‑49 (MQ=255)

                                                accgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccatc   >  1:8241968‑M1/1‑2 (MQ=255)

                                                accgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccatc   >  1:1167531‑M1/1‑2 (MQ=255)

                                                accgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccatc   <  1:1654451‑M1/50‑49 (MQ=255)

                                                accgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccatc   <  1:1785392‑M1/50‑49 (MQ=255)

                                                 ccgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccatcg  <  1:5544931‑M1/50‑50 (MQ=255)

                                                 ccgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccatcg  >  1:4273498‑M1/1‑1 (MQ=255)

                                                 ccgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccatcg  <  1:3529407‑M1/50‑50 (MQ=255)

CTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACATGAACCGCTTTGTGGTGGCCGAACCACTGTGGTGTACAGGATGTAATA  >  NC_000913/2601151‑2601249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`