BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,601,201	Δ13,595 bp		[hyfA]–focB	[hyfA], hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2601201	2614795	13595	124 [0]	[0] 120	[hyfA]–focB	[hyfA],hyfB,hyfC,hyfD,hyfE,hyfF,hyfG,hyfH,hyfI,hyfJ,hyfR,focB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2601200	0 (0.000)	119 (1.100)	66/98	0.0	100%	intergenic (+252/‑1)	bcp/hyfA	thiol peroxidase/hydrogenase 4 component A
*	?	NC_000913	2614796 =	0 (0.000)	119 (1.100)	66/98	0.0	100%	intergenic (+14/+24)	focB/yfgO	putative formate transporter/putative transporter YfgO

Only 100 of 120 total aligned reads displayed.

TGTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCGG  >  NC_000913/2614747‑2614845

tttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   >  1:4153132‑M2/50‑50 (MQ=255)

tttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   >  1:4575547‑M2/50‑50 (MQ=255)

 ttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   >  1:7009058‑M2/49‑49 (MQ=255)

 ttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   >  1:5241030‑M2/49‑49 (MQ=255)

  tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccg                                                  >  1:4303521‑M2/48‑49 (MQ=255)

  tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccg                                                  >  1:2135044‑M2/48‑49 (MQ=255)

   atgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccga                                                 >  1:1229359‑M2/47‑49 (MQ=255)

   atgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccga                                                 >  1:7433156‑M2/47‑49 (MQ=255)

    tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                               <  1:3402078‑M2/5‑1 (MQ=255)

    tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                               >  1:728418‑M2/46‑50 (MQ=255)

    tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                               <  1:446606‑M2/5‑1 (MQ=255)

      caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAAc                                              <  1:7174979‑M2/6‑1 (MQ=255)

      caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACa                                             <  1:1968661‑M2/7‑1 (MQ=255)

      caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACa                                             <  1:7837708‑M2/7‑1 (MQ=255)

      caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACa                                             <  1:4966470‑M2/7‑1 (MQ=255)

       aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                            <  1:4989773‑M2/8‑1 (MQ=255)

       aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                            <  1:772668‑M2/8‑1 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           >  1:3579033‑M2/42‑50 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           <  1:3330988‑M2/9‑1 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           <  1:3187534‑M2/9‑1 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           <  1:8148729‑M2/9‑1 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           <  1:4819387‑M2/9‑1 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           >  1:1426674‑M2/42‑50 (MQ=255)

         tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                          <  1:1868414‑M2/10‑1 (MQ=255)

         tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                          <  1:7417900‑M2/10‑1 (MQ=255)

          atgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         >  1:3994648‑M2/40‑50 (MQ=255)

          atgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         >  1:7587548‑M2/40‑50 (MQ=255)

          atgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         >  1:5913153‑M2/40‑50 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcg                                        >  1:1603886‑M2/39‑50 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcg                                        >  1:2831563‑M2/39‑50 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         <  1:7809795‑M2/11‑1 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         <  1:1407826‑M2/11‑1 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         <  1:7761848‑M2/11‑1 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         <  1:2962372‑M2/11‑1 (MQ=255)

            gaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgt                                       >  1:1054324‑M2/38‑50 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      <  1:1741252‑M2/14‑1 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      >  1:4451210‑M2/37‑50 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      >  1:4023754‑M2/37‑50 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgt                                       <  1:4959728‑M2/13‑1 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgt                                       <  1:2634510‑M2/13‑1 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     <  1:2470920‑M2/15‑1 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     >  1:4257024‑M2/36‑50 (MQ=255)

               atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    <  1:8152050‑M2/16‑1 (MQ=255)

               atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    <  1:5259757‑M2/16‑1 (MQ=255)

               atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    >  1:1519472‑M2/35‑50 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                   <  1:164217‑M2/17‑1 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                   <  1:5760065‑M2/17‑1 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                   <  1:6459045‑M2/17‑1 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                   >  1:4300197‑M2/34‑50 (MQ=255)

                  caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGc                                  <  1:8221409‑M2/18‑1 (MQ=255)

                  caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 <  1:4930383‑M2/19‑1 (MQ=255)

                   aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 >  1:3600519‑M2/31‑49 (MQ=255)

                   aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 >  1:5888054‑M2/31‑49 (MQ=255)

                   aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 >  1:1674296‑M2/31‑49 (MQ=255)

                    atgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                                >  1:4573422‑M2/30‑49 (MQ=255)

                     tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                                >  1:2974942‑M2/29‑48 (MQ=255)

                     tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGaa                              <  1:7526256‑M2/22‑1 (MQ=255)

                     tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGaa                              <  1:1732031‑M2/22‑1 (MQ=255)

                       tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAg                             <  1:5714904‑M2/23‑1 (MQ=255)

                       tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGa                            <  1:4229067‑M2/24‑1 (MQ=255)

                       tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGa                            <  1:5801979‑M2/24‑1 (MQ=255)

                         tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:3495814‑M2/25‑49 (MQ=255)

                         tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:614066‑M2/25‑49 (MQ=255)

                          catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta                         >  1:1668398‑M2/24‑50 (MQ=255)

                           atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        >  1:4540284‑M2/23‑50 (MQ=255)

                           atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        <  1:4612950‑M2/28‑1 (MQ=255)

                           atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        >  1:7910665‑M2/23‑50 (MQ=255)

                           atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta                         <  1:5584157‑M2/27‑1 (MQ=255)

                            tatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattatt                       <  1:1945939‑M2/29‑1 (MQ=255)

                            tatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattatt                       >  1:6935301‑M2/22‑50 (MQ=255)

                             atcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc                      >  1:273287‑M2/21‑50 (MQ=255)

                              tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc                      <  1:1152680‑M2/30‑1 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTAttcgt                    <  1:2659858‑M2/32‑3 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTg                   <  1:4586269‑M2/33‑1 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTg                   <  1:6379618‑M2/33‑1 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTg                   >  1:2669865‑M2/18‑50 (MQ=255)

                                 ttttcaaggagcggacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc                  <  1:6545017‑M2/34‑1 (MQ=255)

                                 ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc                  >  1:1960588‑M2/17‑50 (MQ=255)

                                 ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc                  >  1:2271170‑M2/17‑50 (MQ=255)

                                  tttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcg                 >  1:2258494‑M2/16‑50 (MQ=255)

                                    tcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc                <  1:7320463‑M2/36‑1 (MQ=255)

                                     caaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGa              >  1:1147410‑M2/13‑50 (MQ=255)

                                     caaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGa              >  1:229487‑M2/13‑50 (MQ=255)

                                      aaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAt             <  1:8171734‑M2/39‑1 (MQ=255)

                                       aggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAtt            >  1:7090692‑M2/11‑50 (MQ=255)

                                       aggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAtt            <  1:3830384‑M2/40‑1 (MQ=255)

                                        ggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAttt           <  1:3299875‑M2/41‑1 (MQ=255)

                                         gagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTg          <  1:4517669‑M2/42‑1 (MQ=255)

                                          agccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGc         >  1:5151951‑M2/8‑50 (MQ=255)

                                            ccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGccc       <  1:2237152‑M2/45‑1 (MQ=255)

                                             cgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCa      >  1:7402306‑M2/5‑50 (MQ=255)

                                              gacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAt     <  1:2772320‑M2/47‑1 (MQ=255)

                                              gacCGAAACAGGTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAt     >  1:2539099‑M2/4‑50 (MQ=255)

                                               acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc    >  1:8241968‑M2/3‑50 (MQ=255)

                                               acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc    >  1:1167531‑M2/3‑50 (MQ=255)

                                               acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc    <  1:1785392‑M2/48‑1 (MQ=255)

                                               acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc    <  1:322017‑M2/48‑1 (MQ=255)

                                                cCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCg   <  1:3529407‑M2/49‑1 (MQ=255)

                                                cCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCg   <  1:5544931‑M2/49‑1 (MQ=255)

                                                 cGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCgg  >  1:1947903/1‑50 (MQ=255)

TGTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCGG  >  NC_000913/2614747‑2614845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`