BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,651,293	Δ2,422 bp		[yhiS]–yhiS	[yhiS], insH‑11, yhiS

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3651293	3653714	2422	225 [0]	[0] 224	[yhiS]–yhiS	[yhiS],insH‑11,yhiS

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3651292	0 (0.000)	208 (2.010)	85/94	0.0	100%	pseudogene (2/746 nt)	yhiS	putative uncharacterized protein YhiS
*	?	NC_000913	3653715 =	0 (0.000)	208 (2.010)	85/94	0.0	100%	intergenic (+2/‑246)	yhiS/slp	putative uncharacterized protein YhiS/starvation lipoprotein

Only 100 of 225 total aligned reads displayed.

TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATAT  >  NC_000913/3651243‑3651340

tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT                                                  <  1:7978265‑M1/50‑1 (MQ=255)

tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT                                                  <  1:1769469‑M1/50‑1 (MQ=255)

 ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa                                                 >  1:2540754‑M1/1‑49 (MQ=255)

 ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa                                                 >  1:5248231‑M1/1‑49 (MQ=255)

  cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat                                                <  1:6655895‑M1/50‑3 (MQ=255)

  cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat                                                >  1:1533350‑M1/1‑48 (MQ=255)

  cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa                                                 <  1:3732453‑M1/49‑2 (MQ=255)

  cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa                                                 <  1:7278087‑M1/49‑2 (MQ=255)

  cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa                                                 <  1:6748362‑M1/49‑2 (MQ=255)

  cAATTTAAACATCTTAACATAAAACAAATGATGAATAAGGAATTTTATat                                                <  1:1849126‑M1/50‑3 (MQ=255)

   aaTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt                                               <  1:4954490‑M1/50‑4 (MQ=255)

   aaTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt                                               >  1:5734284‑M1/1‑47 (MQ=255)

    aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt                                               >  1:880697‑M1/1‑46 (MQ=255)

       tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                            <  1:2055254‑M1/49‑7 (MQ=255)

       tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                            <  1:4462520‑M1/49‑7 (MQ=255)

       tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                            >  1:3880744‑M1/1‑43 (MQ=255)

        aaaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatt                                           <  1:8191409‑M1/49‑8 (MQ=255)

         aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                         <  1:6023080‑M1/50‑10 (MQ=255)

         aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                         <  1:4612769‑M1/50‑10 (MQ=255)

         aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                         >  1:5417224‑M1/1‑41 (MQ=255)

         aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                         >  1:3270439‑M1/1‑41 (MQ=255)

          aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatt                                        <  1:1688114‑M1/50‑11 (MQ=255)

          aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                         >  1:6317783‑M1/1‑40 (MQ=255)

           cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                         >  1:3972087‑M1/1‑39 (MQ=255)

            aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag                                      >  1:8289820‑M1/1‑38 (MQ=255)

            aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag                                      <  1:7795741‑M1/50‑13 (MQ=255)

            aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag                                      >  1:2837913‑M1/1‑38 (MQ=255)

            aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag                                      >  1:7113667‑M1/1‑38 (MQ=255)

             tCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag                                      >  1:293680‑M1/1‑37 (MQ=255)

              cTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca                                    >  1:2964277‑M1/1‑36 (MQ=255)

              cTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca                                    >  1:4358619‑M1/1‑36 (MQ=255)

               ttAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac                                   >  1:5720938‑M1/1‑35 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt                                 >  1:5520260‑M1/1‑33 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact                                  <  1:7612035‑M1/49‑17 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact                                  <  1:6730320‑M1/49‑17 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact                                  <  1:1464642‑M1/49‑17 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac                                   <  1:6412842‑M1/48‑16 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac                                   <  1:6129917‑M1/48‑16 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac                                   <  1:4691234‑M1/48‑16 (MQ=255)

                  gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttt                                <  1:7365936‑M1/50‑19 (MQ=255)

                   cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                               >  1:6545424‑M1/1‑31 (MQ=255)

                   cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                               <  1:1903493‑M1/50‑20 (MQ=255)

                   cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                               <  1:2321205‑M1/50‑20 (MQ=255)

                   cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                               >  1:5314028‑M1/1‑31 (MQ=255)

                    aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttat                              <  1:4099879‑M1/50‑21 (MQ=255)

                    aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                               >  1:2689649‑M1/1‑30 (MQ=255)

                    aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                               >  1:6245146‑M1/1‑30 (MQ=255)

                     tAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttata                             <  1:822947‑M1/50‑22 (MQ=255)

                     tAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttata                             <  1:4713195‑M1/50‑22 (MQ=255)

                     tAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttat                              >  1:7026278‑M1/1‑29 (MQ=255)

                      aaaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataa                            >  1:8160075‑M1/1‑28 (MQ=255)

                       aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat                           >  1:6949147‑M1/1‑27 (MQ=255)

                       aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat                           <  1:6362125‑M1/50‑24 (MQ=255)

                        aaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat                           >  1:1003086‑M1/1‑26 (MQ=255)

                         aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca                         >  1:734669‑M1/1‑25 (MQ=255)

                          cAAATGATGAATAAGGAATTTTATattggttattagcactttataatcat                        <  1:5049782‑M1/50‑27 (MQ=255)

                          cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat                        <  1:4168567‑M1/50‑27 (MQ=255)

                           aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt                       >  1:1025831‑M1/1‑23 (MQ=255)

                           aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt                       <  1:7734997‑M1/50‑28 (MQ=255)

                           aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt                       >  1:5618630‑M1/1‑23 (MQ=255)

                            aaTGATGAATAAGGAATTTTATattgattattagcactttataatcattg                      <  1:5955071‑M1/50‑29 (MQ=255)

                            aaTGATGAATAAGGAATTTTATattgattattagcactttataatcattg                      <  1:74655‑M1/50‑29 (MQ=255)

                             atgatgAATAAGGAATTTTATattgattattagcactttataatcattga                     <  1:3297790‑M1/50‑30 (MQ=255)

                             atgatgAATAAGGAATTTTATattgattattagcactttataatcattga                     <  1:6625017‑M1/50‑30 (MQ=255)

                             atgatgAATAAGGAATTTTATattgattattagcactttataatcattg                      >  1:1426392‑M1/1‑21 (MQ=255)

                             atgatgAATAAGGAATTTTATattgattattagcactttataatcattg                      >  1:7398098‑M1/1‑21 (MQ=255)

                               gatgaATAAGGAATTTTATattgattattagcactttataatcattgaa                    >  1:2460949‑M1/1‑19 (MQ=255)

                               gatgaATAAGGAATTTTATattgattattagcactttataatcattgaa                    >  1:8202087‑M1/1‑19 (MQ=255)

                                atgaATAAGGAATTTTATattgattattagcactttataatcattgaata                  <  1:6783801‑M1/50‑33 (MQ=255)

                                atgaATAAGGAATTTTATattgattattagcactttataatcattgaat                   <  1:3130502‑M1/49‑32 (MQ=255)

                                atgaATAAGGAATTTTATattgattattagcactttataatcattgaat                   >  1:4188427‑M1/1‑18 (MQ=255)

                                atgaATAAGGAATTTTATattgattattagcactttataatcattgaat                   <  1:5868345‑M1/49‑32 (MQ=255)

                                 tgaATAAGGAATTTTATattgattattagcactttataatcattgaata                  >  1:3833387‑M1/1‑17 (MQ=255)

                                 tgaATAAGGAATTTTATattgattattagcactttataatcattgaata                  >  1:6209215‑M1/1‑17 (MQ=255)

                                   aaTAAGGAATTTTATattgattattagcactttataatcattgaataaaa               <  1:1086772‑M1/50‑36 (MQ=255)

                                    aTAAGGAATTTTATattgattattagcactttataatcattgaataaaaa              >  1:8072741‑M1/1‑14 (MQ=255)

                                     tAAGGAATTTTATattgattattagcactttataatcattgaataaaaat             <  1:8311988‑M1/50‑38 (MQ=255)

                                     tAAGGAATTTTATattgattattagcactttataatcattgaataaaaat             <  1:2644814‑M1/50‑38 (MQ=255)

                                     tAAGGAATTTTATattgattattagcactttataatcattgaataaaaat             <  1:5647605‑M1/50‑38 (MQ=255)

                                     tAAGGAATTTTATattgattattagcactttataatcattgaataaaaa              >  1:7669464‑M1/1‑13 (MQ=255)

                                       aGGAATTTTATattgattattagcactttataatcattgaataaaaata            <  1:3053771‑M1/49‑39 (MQ=255)

                                         gAATTTTATattgattattagcactttataatcattgaataaaaatagat         >  1:2770924‑M1/1‑9 (MQ=255)

                                         gAATTTTATattgattattagcactttataatcattgaataaaaatagat         <  1:5854270‑M1/50‑42 (MQ=255)

                                          aaTTTTATattgattattagcactttataatcattgaataaaaatagatt        >  1:3380285‑M1/1‑8 (MQ=255)

                                           aTTTTATattgattattagcactttataatcattgaataaaaatagattt       >  1:5832684‑M1/1‑7 (MQ=255)

                                           aTTTTATattgattattagcactttataatcattgaataaaaatagattt       >  1:5106302‑M1/1‑7 (MQ=255)

                                           aTTTTATattgattattagcactttataatcattgaataaaaatagattt       <  1:3989562‑M1/50‑44 (MQ=255)

                                            ttttATattgattattagcactttataatcattgaataaaaatagatttt      <  1:3507733‑M1/50‑45 (MQ=255)

                                            ttttATattgattattagcactttataatcattgaataaaaatagatttt      <  1:6153055‑M1/50‑45 (MQ=255)

                                              ttATattgattattagcactttataatcattgaataaaaatagattttat    >  1:7646370‑M1/1‑4 (MQ=255)

                                              ttATattgattattagcactttataatcattgaataaaaatagattttat    >  1:6856816‑M1/1‑4 (MQ=255)

                                              ttATattgattattagcactttataatcattgaataaaaatagattttat    >  1:4180984‑M1/1‑4 (MQ=255)

                                              ttATattgattattagcactttataatcattgaataaaaatagattttat    >  1:6231246‑M1/1‑4 (MQ=255)

                                                atattgattattagcactttataatcattgaataaaaatagattttatg   >  1:1449570‑M1/1‑2 (MQ=255)

                                                atattgattattagcactttataatcattgaataaaaatagattttatg   <  1:7161773‑M1/49‑48 (MQ=255)

                                                atattgattattagcactttataatcattgaataaaaatagattttatg   <  1:3545804‑M1/49‑48 (MQ=255)

                                                atattgattattagcactttataatcattgaataaaaatagattttatg   >  1:4921580‑M1/1‑2 (MQ=255)

                                                atattgattattagcactttataatcattgaataaaaatagattttatg   <  1:2202523‑M1/49‑48 (MQ=255)

                                                 tattgattattagcactttataatcattgaataaaaatagattttatgt  <  1:1220645‑M1/49‑49 (MQ=255)

                                                 tattgattattagcactttataatcattgaataaaaatagattttatgt  <  1:7190246‑M1/49‑49 (MQ=255)

TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATAT  >  NC_000913/3651243‑3651340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`