| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 99 [0] | [0] 96 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 95 (0.970) | 61/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040452‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:1489802/1‑50ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:4580910/1‑50 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:2657445/49‑1 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:669909/49‑1 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT > 1:2229515/1‑50 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 1:4377935/49‑1 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 1:1785681/49‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:2436104/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT < 1:1155959/50‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:6105597/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:1002151/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:1026732/48‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:495895/48‑1 GGTTCGTCGGCATTTTGTTGATGTGTTCTCTCTCCACCCTTCAGTTCGA > 1:7079599/1‑49 GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA < 1:1175363/49‑1 GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:3486468/1‑49 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:1864100/50‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:6897158/50‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:3603880/50‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA > 1:3168822/1‑50 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT < 1:7386953/49‑1 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:4011337/1‑50 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:5815550/1‑50 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:3341836/1‑50 TCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC > 1:5987499/1‑50 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:3770435/49‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 1:3315084/1‑50 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT < 1:6526862/49‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT < 1:3612050/49‑1 TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG > 1:3111268/1‑50 TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG < 1:6500148/50‑1 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:4084270/1‑50 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:3207691/1‑50 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:3621536/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG < 1:551599/50‑1 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:4750660/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG < 1:2469900/49‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:1080887/50‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:5218562/1‑49 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:3867892/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:5496589/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:6908799/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:3123538/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT < 1:5394303/50‑1 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT < 1:1803947/50‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:5042177/49‑1 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:7413040/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG < 1:1870860/49‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:1870275/1‑50 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACG < 1:1610242/50‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:849924/49‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:2449482/49‑1 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA > 1:5775732/1‑50 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC > 1:7552288/1‑50 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC > 1:6185151/1‑50 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC > 1:3466228/1‑50 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA < 1:2881642/49‑1 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA < 1:5153956/49‑1 ATGTGTTCGCTCTCCGCCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:5962072/49‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:6556788/49‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:4529861/49‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:1368212/49‑1 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGA > 1:7096902/1‑50 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGA > 1:3245571/1‑50 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:6147100/1‑50 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:3813381/1‑50 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:2910330/1‑50 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:514520/1‑50 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:5116214/1‑50 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 1:3642422/49‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 1:4177479/49‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 1:7087619/49‑1 GTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:2902387/1‑49 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:5715607/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGT < 1:998821/49‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGT < 1:2405069/49‑1 TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:3974036/1‑47 TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:2076606/1‑47 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA > 1:906978/1‑50 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG < 1:447686/49‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC < 1:3861447/50‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 1:6135051/49‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 1:4270780/49‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:2952361/1‑50 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT < 1:5338739/50‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:5006271/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:4119499/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:706061/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:6184218/1‑50 CTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT > 1:864001/1‑50 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT > 1:4955401/1‑50 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG < 1:1790938/48‑1 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:6949863/1‑50 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC < 1:2502943/49‑1 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA > 1:374876/1‑50 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT > 1:4388284/1‑49 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT > 1:4453021/1‑49 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG > 1:6833273/1‑49 TTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > 1:4524135/1‑50 ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040452‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |