| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 99 [0] | [0] 96 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 95 (0.970) | 61/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC > NC_000913/1040452‑1040549 | aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:1489802‑M1/1‑50 (MQ=255)aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:4580910‑M1/1‑50 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:2657445‑M1/49‑1 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:669909‑M1/49‑1 (MQ=255) aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagt > 1:2229515‑M1/1‑46 (MQ=255) aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag < 1:4377935‑M1/49‑4 (MQ=255) aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag < 1:1785681‑M1/49‑4 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt > 1:2436104‑M1/1‑45 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt < 1:1155959‑M1/50‑6 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt > 1:6105597‑M1/1‑45 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt > 1:1002151‑M1/1‑45 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc < 1:1026732‑M1/48‑7 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc < 1:495895‑M1/48‑7 (MQ=255) ggTTCGTCGGCATTTTGTTGATGTGTTCTCTCTCCACCCTTcagttcga > 1:7079599‑M1/1‑41 (MQ=255) ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga < 1:1175363‑M1/49‑9 (MQ=255) ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 1:3486468‑M1/1‑41 (MQ=255) gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgata < 1:1864100‑M1/50‑11 (MQ=255) gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgata < 1:6897158‑M1/50‑11 (MQ=255) gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgata < 1:3603880‑M1/50‑11 (MQ=255) gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgata > 1:3168822‑M1/1‑40 (MQ=255) gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgat < 1:7386953‑M1/49‑10 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac > 1:4011337‑M1/1‑39 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac > 1:5815550‑M1/1‑39 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac > 1:3341836‑M1/1‑39 (MQ=255) tcgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacc > 1:5987499‑M1/1‑38 (MQ=255) cgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacc < 1:3770435‑M1/49‑13 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctg > 1:3315084‑M1/1‑36 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacct < 1:6526862‑M1/49‑14 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacct < 1:3612050‑M1/49‑14 (MQ=255) tcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgg > 1:3111268‑M1/1‑35 (MQ=255) tcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgg < 1:6500148‑M1/50‑16 (MQ=255) cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg > 1:4084270‑M1/1‑34 (MQ=255) cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg > 1:3207691‑M1/1‑34 (MQ=255) cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg > 1:3621536‑M1/1‑34 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg < 1:551599‑M1/50‑18 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:4750660‑M1/1‑33 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg < 1:2469900‑M1/49‑17 (MQ=255) gCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggt < 1:1080887‑M1/50‑19 (MQ=255) gCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:5218562‑M1/1‑32 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 1:3867892‑M1/1‑31 (MQ=255) aTTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtat > 1:5496589‑M1/1‑30 (MQ=255) aTTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtat > 1:6908799‑M1/1‑30 (MQ=255) aTTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtat > 1:3123538‑M1/1‑30 (MQ=255) aTTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtat < 1:5394303‑M1/50‑21 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt < 1:1803947‑M1/50‑22 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc < 1:5042177‑M1/49‑23 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcga > 1:7413040‑M1/1‑26 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcg < 1:1870860‑M1/49‑24 (MQ=255) gttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac > 1:1870275‑M1/1‑25 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacg < 1:1610242‑M1/50‑27 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac < 1:849924‑M1/49‑26 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac < 1:2449482‑M1/49‑26 (MQ=255) tgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacga > 1:5775732‑M1/1‑23 (MQ=255) gATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:7552288‑M1/1‑22 (MQ=255) gATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:6185151‑M1/1‑22 (MQ=255) gATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:3466228‑M1/1‑22 (MQ=255) gATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacga < 1:2881642‑M1/49‑28 (MQ=255) gATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacga < 1:5153956‑M1/49‑28 (MQ=255) aTGTGTTCGCTCTCCGCCCTTcagttcgatacctggggtattcgacgac < 1:5962072‑M1/49‑29 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac < 1:6556788‑M1/49‑29 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac < 1:4529861‑M1/49‑29 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac < 1:1368212‑M1/49‑29 (MQ=255) tgtgTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacga > 1:7096902‑M1/1‑20 (MQ=255) tgtgTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacga > 1:3245571‑M1/1‑20 (MQ=255) gtgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac > 1:6147100‑M1/1‑19 (MQ=255) gtgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac > 1:3813381‑M1/1‑19 (MQ=255) gtgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac > 1:2910330‑M1/1‑19 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:514520‑M1/1‑18 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:5116214‑M1/1‑18 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 1:3642422‑M1/49‑32 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 1:4177479‑M1/49‑32 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 1:7087619‑M1/49‑32 (MQ=255) gtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:2902387‑M1/1‑17 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgta < 1:5715607‑M1/50‑35 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgt < 1:998821‑M1/49‑34 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgt < 1:2405069‑M1/49‑34 (MQ=255) tCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:3974036‑M1/1‑15 (MQ=255) tCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:2076606‑M1/1‑15 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga > 1:906978‑M1/1‑14 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtag < 1:447686‑M1/49‑36 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtagac < 1:3861447‑M1/50‑38 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga < 1:6135051‑M1/49‑37 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga < 1:4270780‑M1/49‑37 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact > 1:2952361‑M1/1‑12 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact < 1:5338739‑M1/50‑39 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact > 1:5006271‑M1/1‑12 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:4119499‑M1/1‑11 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:706061‑M1/1‑11 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:6184218‑M1/1‑11 (MQ=255) ctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt > 1:864001‑M1/1‑10 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt > 1:4955401‑M1/1‑9 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg < 1:1790938‑M1/48‑40 (MQ=255) ccACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc > 1:6949863‑M1/1‑8 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc < 1:2502943‑M1/49‑43 (MQ=255) aCCCTTcagttcgatacctggggtattcgacgacgacgtagactgttcca > 1:374876‑M1/1‑6 (MQ=255) ccTTcagttcgatacctggggtattcgacgacgacgtagactgttccat > 1:4388284‑M1/1‑4 (MQ=255) ccTTcagttcgatacctggggtattcgacgacgacgtagactgttccat > 1:4453021‑M1/1‑4 (MQ=255) cTTcagttcgatacctggggtattcgacgacgacgtagactgttccatg > 1:6833273‑M1/1‑3 (MQ=255) ttcagttcgatacctggggtattcgacgacgacgtagactgttccatgaa > 1:4524135‑M1/1‑2 (MQ=255) | ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC > NC_000913/1040452‑1040549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |