| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 96 [0] | [0] 96 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 95 (0.950) | 58/98 | 0.0 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTT > NC_000913/3090296‑3090395 | aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg > 1:4056649/1‑50 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc < 1:1127388‑M1/50‑2 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc > 1:1458233‑M1/1‑49 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:2727028‑M1/1‑48 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc < 1:1750973‑M1/50‑3 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:108004‑M1/1‑47 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:4399886‑M1/1‑47 (MQ=255) aaaCAGCTTTCACTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:452889‑M1/50‑5 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:3664988‑M1/50‑6 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:3390152‑M1/50‑6 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:4658811‑M1/50‑6 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:1678129‑M1/1‑45 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:3364360‑M1/50‑7 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca > 1:266912‑M1/1‑44 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:586574‑M1/1‑43 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:2409744‑M1/1‑43 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:1869895‑M1/1‑42 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:2541503‑M1/1‑42 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 1:2903365‑M1/50‑10 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:4156108‑M1/50‑11 (MQ=255) ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg > 1:5245664‑M1/1‑38 (MQ=255) ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg > 1:4045368‑M1/1‑38 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:4017334‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:4361151‑M1/48‑12 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctactctagcgg < 1:6961573‑M1/49‑14 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:1973159‑M1/1‑36 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:1616809‑M1/1‑36 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg < 1:7584453‑M1/49‑14 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg < 1:3129204‑M1/49‑14 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:1508282‑M1/1‑36 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:3529528‑M1/1‑36 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:1895784‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:2449427‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:2431595‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga < 1:3188943‑M1/50‑16 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcccacactagcgggt > 1:6579562‑M1/1‑35 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat < 1:35610‑M1/50‑17 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat > 1:5799137‑M1/1‑34 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:880597‑M1/1‑33 (MQ=255) aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc > 1:4668699‑M1/1‑32 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct > 1:6059400‑M1/1‑31 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc < 1:4443943‑M1/49‑19 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc < 1:99256‑M1/49‑19 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc < 1:1758127‑M1/49‑19 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:5521940‑M1/48‑18 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:2693422‑M1/48‑18 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:6183876‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:3762801‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:5061401‑M1/1‑30 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:6452521‑M1/50‑22 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:2115862‑M1/50‑22 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:2397470‑M1/50‑22 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:3693447‑M1/1‑28 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt > 1:3765121‑M1/1‑27 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt > 1:448306‑M1/1‑27 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg < 1:5044765‑M1/50‑25 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg < 1:2046138‑M1/50‑25 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:3539455‑M1/49‑24 (MQ=255) ttgctCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:2722706‑M1/3‑25 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:7574174‑M1/1‑25 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:6920844‑M1/1‑25 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:339104‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:2121567‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:6289081‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:2642665‑M1/1‑23 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:7223118‑M1/1‑23 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:2491610‑M1/1‑23 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:6040690‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt < 1:590581‑M1/48‑26 (MQ=255) cGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc > 1:4970856‑M1/1‑20 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:181194‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:3748638‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:6103036‑M1/1‑19 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:4367381‑M1/50‑33 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta > 1:6011719‑M1/1‑16 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:5195878‑M1/49‑34 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac > 1:6556170‑M1/1‑15 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac > 1:4323959‑M1/1‑15 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta < 1:1550015‑M1/49‑35 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc > 1:1879101‑M1/1‑14 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac < 1:5650662‑M1/49‑36 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc > 1:5792209‑M1/1‑13 (MQ=255) cacGGAG‑AAGTGcctacgctagcgggattctttttgttaacccctacccc < 1:577641‑M1/50‑39 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 1:107503‑M1/50‑39 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:5136572‑M1/3‑7 (MQ=255) gaagTGcctacactagcgggattctttttgttaacccctaccccacgcgt < 1:117607‑M1/49‑45 (MQ=255) gaagTGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:7402589‑M1/2‑6 (MQ=255) aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta < 1:3706316‑M1/50‑46 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac < 1:5949024‑M1/50‑47 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac < 1:6891769‑M1/50‑47 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgta > 1:7599927‑M1/1‑4 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtaca < 1:375172‑M1/50‑48 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtac > 1:5404504‑M1/1‑3 (MQ=255) tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa < 1:2802137‑M1/50‑49 (MQ=255) tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa > 1:3217841‑M1/1‑2 (MQ=255) gcctacactagcgggattctttttgttaacccctaccccacgcgtacaac > 1:2327497‑M1/1‑1 (MQ=255) | ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTT > NC_000913/3090296‑3090395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |