| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 96 [0] | [0] 96 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 95 (0.950) | 58/98 | 0.0 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC > NC_000913/3091006‑3091104 | ccaaaacagctttcgctacgttgctggctcgttttaacacggagaagtgc < 1:1127388‑M2/1‑1 (MQ=255)ccaaaacagctttcgctacgttgctggctcgttttaacacggagaagtgc > 1:1458233‑M2/50‑50 (MQ=255) caaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc > 1:2727028‑M2/49‑50 (MQ=255) caaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc < 1:1750973‑M2/2‑1 (MQ=255) aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc > 1:108004‑M2/48‑49 (MQ=255) aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc > 1:4399886‑M2/48‑49 (MQ=255) aaacagctttcactacgttgctggctcgttttaacacggagaagtgCCTa < 1:452889‑M2/4‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTac < 1:3664988‑M2/5‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTac < 1:3390152‑M2/5‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTac < 1:4658811‑M2/5‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa > 1:1678129‑M2/46‑49 (MQ=255) acagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca > 1:266912‑M2/45‑50 (MQ=255) acagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca < 1:3364360‑M2/6‑1 (MQ=255) cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:586574‑M2/44‑50 (MQ=255) cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:2409744‑M2/44‑50 (MQ=255) agctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:1869895‑M2/43‑49 (MQ=255) agctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:2541503‑M2/43‑49 (MQ=255) gctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTa < 1:2903365‑M2/9‑1 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg < 1:4156108‑M2/10‑1 (MQ=255) ttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg > 1:4045368‑M2/39‑50 (MQ=255) ttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg > 1:5245664‑M2/39‑50 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc < 1:4361151‑M2/11‑1 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg < 1:4017334‑M2/12‑1 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACTCTAGCgg < 1:6961573‑M2/13‑1 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:3529528‑M2/37‑49 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:1616809‑M2/37‑49 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:1973159‑M2/37‑49 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg < 1:3129204‑M2/13‑1 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg < 1:7584453‑M2/13‑1 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:1508282‑M2/37‑49 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa < 1:3188943‑M2/15‑1 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa > 1:2449427‑M2/36‑50 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa > 1:2431595‑M2/36‑50 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa > 1:1895784‑M2/36‑50 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCCACACTAGcgggt > 1:6579562‑M2/36‑49 (MQ=255) ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt > 1:5799137‑M2/35‑50 (MQ=255) ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt < 1:35610‑M2/16‑1 (MQ=255) tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt > 1:880597‑M2/34‑50 (MQ=255) acgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc > 1:4668699‑M2/33‑50 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt < 1:2693422‑M2/17‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt < 1:5521940‑M2/17‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc < 1:99256‑M2/18‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc < 1:4443943‑M2/18‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc < 1:1758127‑M2/18‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCt > 1:6059400‑M2/32‑50 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt > 1:6183876‑M2/31‑50 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt > 1:3762801‑M2/31‑50 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt > 1:5061401‑M2/31‑50 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt < 1:6452521‑M2/21‑1 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt < 1:2115862‑M2/21‑1 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt < 1:2397470‑M2/21‑1 (MQ=255) tgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt > 1:3693447‑M2/29‑50 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt > 1:3765121‑M2/28‑50 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt > 1:448306‑M2/28‑50 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt < 1:3539455‑M2/23‑1 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTg < 1:2046138‑M2/24‑1 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTg < 1:5044765‑M2/24‑1 (MQ=255) ttgctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt > 1:2722706‑M2/26‑50 (MQ=255) tggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt > 1:7574174‑M2/26‑50 (MQ=255) tggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt > 1:6920844‑M2/26‑50 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt > 1:2491610‑M2/24‑49 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt > 1:2642665‑M2/24‑49 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt > 1:7223118‑M2/24‑49 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt < 1:6040690‑M2/26‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt < 1:590581‑M2/25‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTa < 1:2121567‑M2/27‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTa < 1:339104‑M2/27‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTa < 1:6289081‑M2/27‑1 (MQ=255) cgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc > 1:4970856‑M2/21‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:181194‑M2/20‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:6103036‑M2/20‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:3748638‑M2/20‑50 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:4367381‑M2/32‑1 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCt < 1:5195878‑M2/33‑1 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa > 1:6011719‑M2/17‑50 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa < 1:1550015‑M2/34‑1 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAc > 1:4323959‑M2/16‑50 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAc > 1:6556170‑M2/16‑50 (MQ=255) aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc > 1:1879101‑M2/15‑50 (MQ=255) aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAc < 1:5650662‑M2/35‑1 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAccc > 1:5792209‑M2/14‑50 (MQ=255) cacggagaagtgCCTACGCTAGCGGGATTCTTTTTGTTAACCCCTAcccc < 1:577641‑M2/38‑1 (MQ=255) cacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcccc < 1:107503‑M2/38‑1 (MQ=255) agaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcg > 1:5136572‑M2/8‑50 (MQ=255) gaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcg > 1:7402589‑M2/7‑49 (MQ=255) gaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGt < 1:117607‑M2/44‑1 (MQ=255) aagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa < 1:3706316‑M2/45‑1 (MQ=255) agtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa > 1:7599927‑M2/5‑49 (MQ=255) agtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAc < 1:5949024‑M2/46‑1 (MQ=255) agtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAc < 1:6891769‑M2/46‑1 (MQ=255) gtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAc > 1:5404504‑M2/4‑49 (MQ=255) gtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACa < 1:375172‑M2/47‑1 (MQ=255) tgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACaa < 1:2802137‑M2/48‑1 (MQ=255) tgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACaa > 1:3217841‑M2/3‑50 (MQ=255) gCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAc > 1:2327497‑M2/2‑50 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc > 1:6895665/1‑50 (MQ=255) | CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC > NC_000913/3091006‑3091104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |