| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 130 [0] | [0] 128 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 123 (1.260) | 69/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
Only 100 of 128 total aligned reads displayed.
GAGGGACCGTTTAGTAAAGACGTAATCCTGAAAATCACCTATAACTAGTATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT > NC_000913/3191649‑3191746 | gctaatgattagcggcagcaacgcatagcttcacataattctggtttata < 1:3577679‑M2/1‑1 (MQ=255) ctaatgattagcggcagcaacgcatagcttcacataattctggtttatat < 1:4510555‑M2/2‑1 (MQ=255) ctaatgattagcggcagcaacgcatagcttcacataattctggtttatat > 1:2351890‑M2/49‑50 (MQ=255) ctaatgattagcggcagcaacgcatagcttcacataattctggtttatat < 1:1608319‑M2/2‑1 (MQ=255) ctaatgattagcggcagcaacgcatagcttcacataattctggtttatat < 1:6331608‑M2/2‑1 (MQ=255) ctaatgattagcggcagcaacgcatagcttcacataattctggtttatat > 1:5938836‑M2/49‑50 (MQ=255) taatgattagcggcagcaacgcatagcttcacataattctggtttatATc > 1:2988162‑M2/48‑50 (MQ=255) aatgattagcggcagcaacgcatagcttcacataattctggtttatATc > 1:5587213‑M2/47‑49 (MQ=255) aatgattagcggcagcaacgcatagcttcacataattctggtttatATc > 1:6225479‑M2/47‑49 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATCt > 1:1701296‑M2/46‑49 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATCt < 1:6987101‑M2/4‑1 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATCt > 1:3229890‑M2/46‑49 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATCTa < 1:4345304‑M2/5‑1 (MQ=255) tgattagcggcagcaacgcatagcttcacataattctggtttatATCTaa < 1:2664938‑M2/6‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAAt < 1:113503‑M2/7‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAAt < 1:5317275‑M2/7‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAAt < 1:1304295‑M2/7‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAATa < 1:628447‑M2/8‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAATa > 1:1964520‑M2/43‑50 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAATa < 1:6003022‑M2/8‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAATa < 1:5793948‑M2/8‑1 (MQ=255) ttagcggcagcaacgcatagcttcacataattctggtttatATCTAATAc < 1:6593383‑M2/9‑1 (MQ=255) tagcggcagcaacgcatagcttcacataattctggtttatATCTAATAc > 1:2718117‑M2/41‑49 (MQ=255) tagcggcagcaacgcatagcttcacataattctggtttatATCTAATAc > 1:6403934‑M2/41‑49 (MQ=255) tagcggcagcaacgcatagcttcacataattctggtttatATCTAATAc > 1:7029536‑M2/41‑49 (MQ=255) agcggcagcaacgcatagcttcacataattctggtttatATCTAATACa < 1:403207‑M2/10‑1 (MQ=255) agcggcagcaacgcatagcttcacataattctggtttatATCTAATACa > 1:7368126‑M2/40‑49 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaaa < 1:7324901‑M2/12‑1 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaa < 1:4799847‑M2/11‑1 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaa < 1:1213982‑M2/11‑1 (MQ=255) ggcagcaacgcatagcttcacataattctggtttatATCTAATACAAaca > 1:2248926‑M2/37‑50 (MQ=255) ggcagcaacgcatagcttcacataattctggtttatATCTAATACAAaca > 1:7591488‑M2/37‑50 (MQ=255) ggcagcaacgcatagcttcacataattctggtttatATCTAATACAAaca < 1:1975256‑M2/14‑1 (MQ=255) gcagcaacgcatagcttcacataattctggtttatATCTAATACAAacac > 1:5625690‑M2/36‑50 (MQ=255) cagcaacgcatagcttcacataattctggtttatATCTAATACAAacac > 1:667382‑M2/35‑49 (MQ=255) cagcaacgcatagcttcacataattctggtttatATCTAATACAAacac > 1:3480578‑M2/35‑49 (MQ=255) cagcaacgcatagcttcacataattctggtttatATCTAATACAAACACt < 1:6175055‑M2/16‑1 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACt > 1:2106760‑M2/34‑49 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACt > 1:2862203‑M2/34‑49 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACt > 1:5664313‑M2/34‑49 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACTa < 1:3531520‑M2/17‑1 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACTa < 1:3427036‑M2/17‑1 (MQ=255) gcaacgcatagcttcacataattctggtttatATCTAATACAAACACTaa < 1:3052629‑M2/18‑1 (MQ=255) gcaacgcatagcttcacataattctggtttatATCTAATACAAACACTa > 1:1992585‑M2/33‑49 (MQ=255) caacgcatagcttcacataattctggtttatATCTAATACAAACACTaaa < 1:7163699‑M2/19‑1 (MQ=255) aacgcatagcttcacataattctggtttatATCTAATACAAACACTaaaa < 1:697766‑M2/20‑1 (MQ=255) catagcttcacataattctggtttatATCTAATACAAACACTAAAACggg > 1:239336‑M2/27‑50 (MQ=255) catagcttcacataattctggtttatATCTAATACAAACACTAAAACggg > 1:3985262‑M2/27‑50 (MQ=255) catagcttcacataattctggtttatATCTAATACAAACACTAAAACggg < 1:1956158‑M2/24‑1 (MQ=255) atagcttcacataattctggtttatATCTAATACAAACACTAAAACGGGc > 1:2240323‑M2/26‑50 (MQ=255) tagcttcacataattctggtttatATCTAATACAAACACTAAAACGGGc > 1:515882‑M2/25‑49 (MQ=255) tagcttcacataattctggtttatATCTAATACAAACACTAAAACGGGc > 1:5050340‑M2/25‑49 (MQ=255) agcttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCa > 1:3515404‑M2/24‑50 (MQ=255) gcttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCa < 1:6290959‑M2/27‑1 (MQ=255) gcttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCAt < 1:941506‑M2/28‑1 (MQ=255) cttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCATc < 1:5568763‑M2/29‑1 (MQ=255) ttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCAt > 1:5322958‑M2/21‑48 (MQ=255) tcacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAg > 1:4790074‑M2/20‑50 (MQ=255) tcacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAg > 1:5649778‑M2/20‑50 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCa < 1:824500‑M2/30‑1 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCa < 1:6097439‑M2/30‑1 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAgg > 1:5449758‑M2/19‑50 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAgg > 1:2837338‑M2/19‑50 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAg < 1:6856497‑M2/31‑1 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAg < 1:175643‑M2/31‑1 (MQ=255) acataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAgg < 1:1780696‑M2/32‑1 (MQ=255) acataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGc < 1:6582475‑M2/33‑1 (MQ=255) cataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGcc < 1:4394204‑M2/34‑1 (MQ=255) cataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGcc > 1:360592‑M2/17‑50 (MQ=255) ataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGccc > 1:4083874‑M2/16‑50 (MQ=255) ataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGccc > 1:3794424‑M2/16‑50 (MQ=255) taattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCg > 1:2969391‑M2/15‑50 (MQ=255) taattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCg < 1:367838‑M2/36‑1 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGtt < 1:3226579‑M2/38‑1 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGtt < 1:5514399‑M2/38‑1 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:3738895‑M2/13‑49 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:2019563‑M2/13‑49 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:3784947‑M2/13‑49 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:4326306‑M2/13‑49 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:6755609‑M2/13‑49 (MQ=255) tctggtttatATCTAATACAAACACTAAAACGTGCCATCAGGCCCGTta > 1:6558280‑M2/11‑49 (MQ=255) tctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTta > 1:5890698‑M2/11‑49 (MQ=255) tggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTatat > 1:6278954‑M2/9‑50 (MQ=255) tggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTatat > 1:1620455‑M2/9‑50 (MQ=255) ggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTatat > 1:19546‑M2/8‑49 (MQ=255) ggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTatat > 1:4480799‑M2/8‑49 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTatat < 1:2620994‑M2/42‑1 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATc < 1:315693‑M2/43‑1 (MQ=255) gtttatATCTAATACAAACACTAAAACGCGCCATCAGGCCCGTTatat > 1:101286‑M2/7‑48 (MQ=255) tttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAg < 1:6724226‑M2/45‑1 (MQ=255) tttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAg > 1:7001292‑M2/6‑50 (MQ=255) tttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAg > 1:7447762‑M2/6‑50 (MQ=255) tatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTg > 1:4251096‑M2/4‑50 (MQ=255) tatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTg > 1:6151001‑M2/4‑50 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTg < 1:1593375‑M2/47‑1 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGc > 1:1647235‑M2/3‑50 (MQ=255) tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCt > 1:4923296‑M2/2‑50 (MQ=255) tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCt < 1:7167518‑M2/49‑1 (MQ=255) tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCt > 1:7328334‑M2/2‑50 (MQ=255) tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCt < 1:5176162‑M2/49‑1 (MQ=255) | GAGGGACCGTTTAGTAAAGACGTAATCCTGAAAATCACCTATAACTAGTATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT > NC_000913/3191649‑3191746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |