| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 73 [0] | [0] 71 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 70 (0.810) | 42/96 | 0.2 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:4696148/50‑1 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 1:2474704/1‑49 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATAACTC > 1:2668752/1‑49 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTAC > 1:4569082/1‑50 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTTCCc > 1:3319038/1‑49 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTACCc > 1:4390458/1‑49 GCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTGACTCTACCTC > 1:6501407/1‑50 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTGCCTCTACCTCCAT > 1:2983347/1‑50 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGATACTCTACCTCCAT > 1:1242791/1‑50 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:4674551/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:1570865/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:6365780/50‑1 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCCCCATGT > 1:393613/1‑50 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:5521980/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:6202964/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:2330326/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:3282071/49‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCCCCATGTGT > 1:2258509/1‑50 AGATATGCGAGCACCTGTAAAGTGGCGGGGAACACTCATCCCCAATGTGT > 1:3582950/1‑50 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:1359009/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:700146/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:2936566/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:6074650/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:236116/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTACCTCCATGTGTAT > 1:4276528/1‑49 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:5299823/50‑1 ATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTACCCCAAAGTGTATCA > 1:2888711/1‑50 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:2480459/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:1010947/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:3311361/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:2480095/49‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:3429806/49‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:5195053/49‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCCCACTGTGTATta > 1:3760250/1‑47 GCGAGCACCTGTAAAGTGGCGGTGGTCACTCTACCTCCATTTGTATCAC > 1:3006837/1‑49 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAA < 1:4413478/50‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACA < 1:1181603/49‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACA < 1:6183021/49‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACA < 1:1968103/49‑1 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCCATGTGTATCACAA > 1:1897312/1‑49 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:2334750/50‑1 GCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATAT < 1:3926004/50‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:3327357/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:4796764/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:4563536/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:4632976/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:3143570/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:5939484/48‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:1211911/48‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:313038/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:6146867/50‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:242104/50‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:2131658/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:5724785/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:4791308/1‑50 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:4477007/1‑50 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:1208858/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG > 1:3787582/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:3299663/49‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:6618278/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:6457900/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG < 1:2415509/50‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGG < 1:1660392/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:4310088/50‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 1:1065376/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:5609617/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:5471603/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:4869102/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:6704226/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:1790812/50‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 1:4261496/50‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:3518716/1‑50 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 1:5577438/50‑1 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |