| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 73 [0] | [0] 71 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 70 (0.810) | 42/96 | 0.2 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 | tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:4696148‑M1/50‑1 (MQ=255) aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 1:2474704‑M1/1‑49 (MQ=255) aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATAACTC > 1:2668752‑M1/1‑49 (MQ=255) ggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtac > 1:4569082‑M1/1‑47 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCttccc > 1:3319038‑M1/1‑45 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtaccc > 1:4390458‑M1/1‑45 (MQ=255) gCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTGACTCtacctc > 1:6501407‑M1/1‑44 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTGCCTCtacctccat > 1:2983347‑M1/1‑41 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGATACTCtacctccat > 1:1242791‑M1/1‑41 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:4674551‑M1/50‑10 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:1570865‑M1/50‑10 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:6365780‑M1/50‑10 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacccccatgt > 1:393613‑M1/1‑39 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatg < 1:5521980‑M1/49‑11 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:6202964‑M1/50‑13 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgt < 1:2330326‑M1/49‑12 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgt < 1:3282071‑M1/49‑12 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacccccatgtgt > 1:2258509‑M1/1‑37 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGAACACTCatccccaatgtgt > 1:3582950‑M1/1‑37 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgta < 1:1359009‑M1/50‑15 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:700146‑M1/50‑16 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:2936566‑M1/50‑16 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:6074650‑M1/50‑16 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:236116‑M1/50‑16 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtacctccatgtgtat > 1:4276528‑M1/1‑34 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 1:5299823‑M1/50‑17 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtaccccaaagtgtatca > 1:2888711‑M1/1‑33 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 1:2480459‑M1/50‑19 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 1:1010947‑M1/50‑19 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 1:3311361‑M1/50‑19 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatca < 1:2480095‑M1/49‑18 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatca < 1:3429806‑M1/49‑18 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatca < 1:5195053‑M1/49‑18 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtaccccactgtgtatta > 1:3760250‑M1/1‑32 (MQ=255) gCGAGCACCTGTAAAGTGGCGGTGGTCACTCtacctccatttgtatcac > 1:3006837‑M1/1‑31 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaa < 1:4413478‑M1/50‑21 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcaca < 1:1181603‑M1/49‑20 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcaca < 1:6183021‑M1/49‑20 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcaca < 1:1968103‑M1/49‑20 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctccatgtgtatcacaa > 1:1897312‑M1/1‑29 (MQ=255) aGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaata < 1:2334750‑M1/50‑23 (MQ=255) gCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatat < 1:3926004‑M1/50‑24 (MQ=255) cACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatc < 1:3327357‑M1/50‑25 (MQ=255) aCCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcc < 1:4796764‑M1/50‑26 (MQ=255) aCCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcc < 1:4563536‑M1/50‑26 (MQ=255) ccTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcca < 1:4632976‑M1/50‑27 (MQ=255) ccTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcca < 1:3143570‑M1/50‑27 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:5939484‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:1211911‑M1/48‑29 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct < 1:313038‑M1/50‑33 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct < 1:6146867‑M1/50‑33 (MQ=255) aGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctt < 1:242104‑M1/50‑34 (MQ=255) aGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctt < 1:2131658‑M1/50‑34 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:5724785‑M1/50‑35 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 1:4791308‑M1/1‑15 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:4477007‑M1/1‑14 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:1208858‑M1/1‑14 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtg > 1:3787582‑M1/1‑13 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt < 1:3299663‑M1/49‑37 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:6618278‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:6457900‑M1/1‑11 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg < 1:2415509‑M1/50‑41 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggg < 1:1660392‑M1/50‑42 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggga < 1:4310088‑M1/50‑43 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag > 1:1065376‑M1/1‑7 (MQ=255) cACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc > 1:5609617‑M1/1‑5 (MQ=255) cACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc > 1:5471603‑M1/1‑5 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:4869102‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:6704226‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:1790812‑M1/50‑47 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg < 1:4261496‑M1/50‑48 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:3518716‑M1/1‑3 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg < 1:5577438‑M1/50‑48 (MQ=255) | TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |