| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 73 [0] | [0] 71 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 70 (0.810) | 42/96 | 0.2 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20517‑20611 | ggtgcgttgaagatatgcgagcacctgtaaagtggcggggggcactcTAc > 1:4569082‑M2/48‑50 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcgggggtcactcTtccc > 1:3319038‑M2/46‑49 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggggcactcTaccc > 1:4390458‑M2/46‑49 (MQ=255) gcgttgaagatatgcgagcacctgtaaagtggcgggggtgactcTACCTc > 1:6501407‑M2/45‑50 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcgggggtgcctcTACCTCCAt > 1:2983347‑M2/42‑50 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcgggggatactcTACCTCCAt > 1:1242791‑M2/42‑50 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:6365780‑M2/9‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:1570865‑M2/9‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:4674551‑M2/9‑1 (MQ=255) gaagatatgcgagcacctgtaaagtggcgggggtcactcTACCCCCAtgt > 1:393613‑M2/40‑50 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:5521980‑M2/10‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgtg < 1:6202964‑M2/12‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgt < 1:3282071‑M2/11‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgt < 1:2330326‑M2/11‑1 (MQ=255) agatatgcgagcacctgtaaagtggcgggggtcactcTACCCCCATgtgt > 1:2258509‑M2/38‑50 (MQ=255) agatatgcgagcacctgtaaagtggcggggaacactcATCCCCAATgtgt > 1:3582950‑M2/38‑50 (MQ=255) gatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTa < 1:1359009‑M2/14‑1 (MQ=255) atatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTAt < 1:236116‑M2/15‑1 (MQ=255) atatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTAt < 1:2936566‑M2/15‑1 (MQ=255) atatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTAt < 1:700146‑M2/15‑1 (MQ=255) atatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTAt < 1:6074650‑M2/15‑1 (MQ=255) tatgcgagcacctgtaaagtggcggggggcactcTACCTCCATGTGTAt > 1:4276528‑M2/35‑49 (MQ=255) tatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATc < 1:5299823‑M2/16‑1 (MQ=255) atgcgagcacctgtaaagtggcggggggcactcTACCCCAAAGTGTATca > 1:2888711‑M2/34‑50 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:2480459‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:1010947‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:3311361‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATca < 1:2480095‑M2/17‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATca < 1:5195053‑M2/17‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATca < 1:3429806‑M2/17‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCCCACTGTGtatta > 1:3760250‑M2/33‑47 (MQ=255) gcgagcacctgtaaagtggcggtggtcactcTACCTCCATTTGTATcac > 1:3006837‑M2/32‑49 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcaca < 1:6183021‑M2/19‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcaca < 1:1968103‑M2/19‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcaca < 1:1181603‑M2/19‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACaa < 1:4413478‑M2/20‑1 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCCATGTGTATCACaa > 1:1897312‑M2/30‑49 (MQ=255) agcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAata < 1:2334750‑M2/22‑1 (MQ=255) gcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAatat < 1:3926004‑M2/23‑1 (MQ=255) cacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATc < 1:3327357‑M2/24‑1 (MQ=255) acctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATcc < 1:4796764‑M2/25‑1 (MQ=255) acctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATcc < 1:4563536‑M2/25‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:3143570‑M2/26‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:4632976‑M2/26‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 1:5939484‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 1:1211911‑M2/28‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCt < 1:6146867‑M2/32‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCt < 1:313038‑M2/32‑1 (MQ=255) agtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCtt < 1:2131658‑M2/33‑1 (MQ=255) agtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCtt < 1:242104‑M2/33‑1 (MQ=255) gtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCttt < 1:5724785‑M2/34‑1 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg > 1:4791308‑M2/16‑50 (MQ=255) ggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt > 1:4477007‑M2/15‑50 (MQ=255) ggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt > 1:1208858‑M2/15‑50 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgtg > 1:3787582‑M2/14‑50 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt < 1:3299663‑M2/36‑1 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:6618278‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:6457900‑M2/12‑50 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg < 1:2415509‑M2/40‑1 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggggg < 1:1660392‑M2/41‑1 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGa < 1:4310088‑M2/42‑1 (MQ=255) atcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAg > 1:1065376‑M2/8‑50 (MQ=255) cactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc > 1:5609617‑M2/6‑50 (MQ=255) cactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc > 1:5471603‑M2/6‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt < 1:1790812‑M2/46‑1 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt < 1:4869102‑M2/46‑1 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:6704226‑M2/5‑50 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:5577438‑M2/47‑1 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:4261496‑M2/47‑1 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:3518716‑M2/4‑50 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTgg < 1:6294324/48‑1 (MQ=255) | CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20517‑20611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |