| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 89 [0] | [0] 90 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 88 (0.990) | 60/98 | 0.0 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
GCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508824‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 GCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG > 1:2495465/1‑50 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCTGCAATGATGTG > 1:2422125/1‑49 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG < 1:909015/50‑1 GTCGATGTCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG > 1:5816852/1‑49 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA < 1:4383523/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA < 1:2294456/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA < 1:4046357/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA < 1:1666575/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA < 1:5928269/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGCGGAA > 1:560312/1‑50 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG > 1:4425826/1‑50 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG > 1:5854823/1‑50 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC < 1:1637746/50‑1 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC < 1:5505025/50‑1 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC > 1:2042944/1‑50 GCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCG > 1:3160753/1‑49 GCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCG > 1:2423918/1‑49 CCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGC < 1:2182269/49‑1 CCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGC > 1:5316084/1‑49 CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA > 1:2608388/1‑50 CAAATGCGCAACCCTAAAGCAGCGCATCCGCAATGAGGTGGAACGCGCAA > 1:240519/1‑50 AAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT < 1:5762803/50‑1 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATG < 1:4295022/50‑1 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT > 1:2422627/1‑49 TGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC > 1:5118005/1‑50 TGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC < 1:3313933/50‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA > 1:4705312/1‑50 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA < 1:943690/50‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACG < 1:5191401/49‑1 GCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT < 1:5996385/50‑1 GCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT < 1:4985638/50‑1 GCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT > 1:2635171/1‑50 GCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT < 1:3889947/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:1591570/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT > 1:2285277/1‑49 CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA < 1:3293790/50‑1 ACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCAT > 1:180681/1‑50 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCC < 1:3339226/50‑1 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC > 1:4978597/1‑49 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA < 1:3599393/50‑1 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA < 1:4251029/50‑1 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA < 1:4165968/50‑1 TAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCAT > 1:1817956/1‑50 TAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCAT > 1:1184455/1‑50 AAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC > 1:6322424/1‑50 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCC < 1:4719225/50‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCAT < 1:5230482/48‑1 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT < 1:356567/50‑1 GCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTC < 1:689710/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT > 1:2687063/1‑50 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:4716096/50‑1 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG > 1:1677813/1‑50 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG > 1:5433211/1‑50 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG < 1:4891885/50‑1 GCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGC < 1:5962921/50‑1 GCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGC > 1:6663079/1‑50 CGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCT < 1:1209135/50‑1 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 1:5806223/50‑1 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT > 1:2760409/1‑50 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT > 1:5512399/1‑50 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCACCCTCTGCTT < 1:5683309/50‑1 CATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTG < 1:1151001/50‑1 CATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTG > 1:2451354/1‑50 CATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTG < 1:3015544/50‑1 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:1870175/1‑50 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:6503656/1‑50 TCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCC < 1:66335/50‑1 CCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:1094243/1‑48 CCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:4409035/1‑48 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGT < 1:3080019/50‑1 CAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 1:353064/1‑48 AATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:345576/1‑50 AATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:3882271/1‑50 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:3544262/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:6293891/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:2298790/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:6649208/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:875502/1‑48 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:3455506/1‑48 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:4455695/1‑48 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:3859108/1‑48 GATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG > 1:1324404/1‑50 GATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG > 1:893010/1‑50 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGC > 1:5271325/1‑50 TGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG < 1:3907817/50‑1 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA < 1:396847/50‑1 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > 1:6064277/1‑50 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA < 1:3676675/50‑1 GCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508824‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |