Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 508,873 Δ40,744 bp copA–[ylbE] 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 508873 549616 40744 89 [0] [0] 90 copA–[ylbE] copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 5088720 (0.000)88 (0.990) 60/98 0.0 100% intergenic (+313/+3) ybaQ/copA putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase
?NC_000913 549617 = 0 (0.000)intergenic (+1/‑10) ylbE/ylbF DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF

CTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAC  >  NC_000913/549568‑549666
                                                 |                                                 
gcgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg                                                   >  1:2495465‑M2/50‑50 (MQ=255)
 cgtcgatgccaaatgcgccaccctaaagcagcgcatctgcaatgatgtg                                                   >  1:2422125‑M2/49‑49 (MQ=255)
 cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg                                                  <  1:909015‑M2/2‑1 (MQ=255)
  gtcgatgtcaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg                                                  >  1:5816852‑M2/48‑49 (MQ=255)
   tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa                                                <  1:4383523‑M2/4‑1 (MQ=255)
   tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa                                                <  1:2294456‑M2/4‑1 (MQ=255)
   tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa                                                <  1:4046357‑M2/4‑1 (MQ=255)
   tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa                                                <  1:1666575‑M2/4‑1 (MQ=255)
   tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa                                                <  1:5928269‑M2/4‑1 (MQ=255)
   tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgcGGaa                                                >  1:560312‑M2/47‑50 (MQ=255)
     gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg                                              >  1:4425826‑M2/45‑50 (MQ=255)
     gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg                                              >  1:5854823‑M2/45‑50 (MQ=255)
      atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc                                             <  1:1637746‑M2/7‑1 (MQ=255)
      atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc                                             <  1:5505025‑M2/7‑1 (MQ=255)
      atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc                                             >  1:2042944‑M2/44‑50 (MQ=255)
        gccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgcg                                            >  1:2423918‑M2/42‑49 (MQ=255)
        gccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgcg                                            >  1:3160753‑M2/42‑49 (MQ=255)
         ccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACgcgc                                           <  1:2182269‑M2/9‑1 (MQ=255)
         ccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACgcgc                                           >  1:5316084‑M2/41‑49 (MQ=255)
          caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa                                         >  1:2608388‑M2/40‑50 (MQ=255)
          caaatgcgcaaccctaaagcagcgcatccgcaatgaggtGGAACGCGCaa                                         >  1:240519‑M2/40‑50 (MQ=255)
           aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt                                        <  1:5762803‑M2/12‑1 (MQ=255)
            aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt                                        >  1:2422627‑M2/38‑49 (MQ=255)
            aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATg                                       <  1:4295022‑M2/13‑1 (MQ=255)
              tgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGAc                                     <  1:3313933‑M2/15‑1 (MQ=255)
              tgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGAc                                     >  1:5118005‑M2/36‑50 (MQ=255)
                cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACg                                    <  1:5191401‑M2/16‑1 (MQ=255)
                cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa                                   <  1:943690‑M2/17‑1 (MQ=255)
                cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa                                   >  1:4705312‑M2/34‑50 (MQ=255)
                 gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat                                  <  1:3889947‑M2/18‑1 (MQ=255)
                 gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat                                  <  1:4985638‑M2/18‑1 (MQ=255)
                 gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat                                  <  1:5996385‑M2/18‑1 (MQ=255)
                 gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat                                  >  1:2635171‑M2/33‑50 (MQ=255)
                  ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc                                 <  1:1591570‑M2/19‑1 (MQ=255)
                  ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat                                  >  1:2285277‑M2/32‑49 (MQ=255)
                   caccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatca                                <  1:3293790‑M2/20‑1 (MQ=255)
                    accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat                               >  1:180681‑M2/30‑50 (MQ=255)
                      cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc                              >  1:4978597‑M2/28‑49 (MQ=255)
                      cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcc                             <  1:3339226‑M2/23‑1 (MQ=255)
                       ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca                            <  1:3599393‑M2/24‑1 (MQ=255)
                       ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca                            <  1:4165968‑M2/24‑1 (MQ=255)
                       ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca                            <  1:4251029‑M2/24‑1 (MQ=255)
                        taaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccat                           >  1:1184455‑M2/26‑50 (MQ=255)
                        taaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccat                           >  1:1817956‑M2/26‑50 (MQ=255)
                         aaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc                          >  1:6322424‑M2/25‑50 (MQ=255)
                          aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccat                           <  1:5230482‑M2/25‑1 (MQ=255)
                          aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCatccatcc                         <  1:4719225‑M2/27‑1 (MQ=255)
                           agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct                        <  1:356567‑M2/28‑1 (MQ=255)
                            gcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctc                       <  1:689710‑M2/29‑1 (MQ=255)
                             cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct                      >  1:2687063‑M2/21‑50 (MQ=255)
                             cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct                      <  1:4716096‑M2/30‑1 (MQ=255)
                              agcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg                     <  1:4891885‑M2/31‑1 (MQ=255)
                              agcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg                     >  1:1677813‑M2/20‑50 (MQ=255)
                              agcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg                     >  1:5433211‑M2/20‑50 (MQ=255)
                               gcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGc                    >  1:6663079‑M2/19‑50 (MQ=255)
                               gcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGc                    <  1:5962921‑M2/32‑1 (MQ=255)
                                cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt                   <  1:1209135‑M2/33‑1 (MQ=255)
                                 gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt                  >  1:2760409‑M2/17‑50 (MQ=255)
                                 gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt                  >  1:5512399‑M2/17‑50 (MQ=255)
                                 gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt                  <  1:5806223‑M2/34‑1 (MQ=255)
                                 gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCACCCTCTGCtt                  <  1:5683309‑M2/34‑1 (MQ=255)
                                  catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg                 <  1:1151001‑M2/35‑1 (MQ=255)
                                  catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg                 >  1:2451354‑M2/16‑50 (MQ=255)
                                  catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg                 <  1:3015544‑M2/35‑1 (MQ=255)
                                   atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc                >  1:1870175‑M2/15‑50 (MQ=255)
                                   atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc                >  1:6503656‑M2/15‑50 (MQ=255)
                                    tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGcc               <  1:66335‑M2/37‑1 (MQ=255)
                                     ccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc                >  1:1094243‑M2/13‑48 (MQ=255)
                                     ccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc                >  1:4409035‑M2/13‑48 (MQ=255)
                                       gcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagt            <  1:3080019‑M2/40‑1 (MQ=255)
                                        caatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag             >  1:353064‑M2/10‑48 (MQ=255)
                                         aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag          >  1:345576‑M2/9‑50 (MQ=255)
                                         aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag          >  1:3882271‑M2/9‑50 (MQ=255)
                                           tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag          >  1:4455695‑M2/7‑48 (MQ=255)
                                           tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag          >  1:875502‑M2/7‑48 (MQ=255)
                                           tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag          >  1:3455506‑M2/7‑48 (MQ=255)
                                           tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag          >  1:3859108‑M2/7‑48 (MQ=255)
                                           tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta        <  1:2298790‑M2/44‑1 (MQ=255)
                                           tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta        <  1:6649208‑M2/44‑1 (MQ=255)
                                           tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta        <  1:6293891‑M2/44‑1 (MQ=255)
                                           tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta        <  1:3544262‑M2/44‑1 (MQ=255)
                                            gatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag       >  1:893010‑M2/6‑50 (MQ=255)
                                            gatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag       >  1:1324404‑M2/6‑50 (MQ=255)
                                             atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc      >  1:5271325‑M2/5‑50 (MQ=255)
                                              tgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg     <  1:3907817‑M2/47‑1 (MQ=255)
                                                tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa   <  1:396847‑M2/49‑1 (MQ=255)
                                                tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa   >  1:6064277‑M2/2‑50 (MQ=255)
                                                tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa   <  1:3676675‑M2/49‑1 (MQ=255)
                                                 ggAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAc  >  1:1820959/1‑50 (MQ=255)
                                                 ggAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAc  >  1:730811/1‑50 (MQ=255)
                                                 |                                                 
CTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAC  >  NC_000913/549568‑549666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑