| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 89 [0] | [0] 90 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 88 (0.990) | 60/98 | 0.0 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
TGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTA > NC_000913/508823‑508921 | tGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGt > 1:1258935/1‑50 (MQ=255) gCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTg > 1:2495465‑M1/1‑49 (MQ=255) cGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCTGCAATGATGTg > 1:2422125‑M1/1‑48 (MQ=255) cGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTgg < 1:909015‑M1/50‑3 (MQ=255) gTCGATGTCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTgg > 1:5816852‑M1/1‑47 (MQ=255) tCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaa < 1:2294456‑M1/50‑5 (MQ=255) tCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaa < 1:4046357‑M1/50‑5 (MQ=255) tCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaa < 1:4383523‑M1/50‑5 (MQ=255) tCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaa < 1:1666575‑M1/50‑5 (MQ=255) tCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaa < 1:5928269‑M1/50‑5 (MQ=255) tCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGCggaa > 1:560312‑M1/1‑46 (MQ=255) gATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacg > 1:4425826‑M1/1‑44 (MQ=255) gATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacg > 1:5854823‑M1/1‑44 (MQ=255) aTGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgc < 1:1637746‑M1/50‑8 (MQ=255) aTGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgc < 1:5505025‑M1/50‑8 (MQ=255) aTGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgc > 1:2042944‑M1/1‑43 (MQ=255) gCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcg > 1:2423918‑M1/1‑41 (MQ=255) gCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcg > 1:3160753‑M1/1‑41 (MQ=255) ccAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgc < 1:2182269‑M1/49‑10 (MQ=255) ccAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgc > 1:5316084‑M1/1‑40 (MQ=255) cAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaa > 1:2608388‑M1/1‑39 (MQ=255) cAAATGCGCAACCCTAAAGCAGCGCATCCGCAATGAGGTggaacgcgcaa > 1:240519‑M1/1‑39 (MQ=255) aaaTGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaat < 1:5762803‑M1/50‑13 (MQ=255) aaTGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatg < 1:4295022‑M1/50‑14 (MQ=255) aaTGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaat > 1:2422627‑M1/1‑37 (MQ=255) tGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgac < 1:3313933‑M1/50‑16 (MQ=255) tGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgac > 1:5118005‑M1/1‑35 (MQ=255) cgcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacga > 1:4705312‑M1/1‑33 (MQ=255) cgcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacga < 1:943690‑M1/50‑18 (MQ=255) cgcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacg < 1:5191401‑M1/49‑17 (MQ=255) gcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat > 1:2635171‑M1/1‑32 (MQ=255) gcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat < 1:5996385‑M1/50‑19 (MQ=255) gcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat < 1:3889947‑M1/50‑19 (MQ=255) gcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat < 1:4985638‑M1/50‑19 (MQ=255) ccACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatc < 1:1591570‑M1/50‑20 (MQ=255) ccACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat > 1:2285277‑M1/1‑31 (MQ=255) cACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatca < 1:3293790‑M1/50‑21 (MQ=255) aCCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcat > 1:180681‑M1/1‑29 (MQ=255) ccTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatcc < 1:3339226‑M1/50‑24 (MQ=255) ccTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatc > 1:4978597‑M1/1‑27 (MQ=255) cTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatcca < 1:3599393‑M1/50‑25 (MQ=255) cTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatcca < 1:4165968‑M1/50‑25 (MQ=255) cTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatcca < 1:4251029‑M1/50‑25 (MQ=255) tAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatccat > 1:1184455‑M1/1‑25 (MQ=255) tAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatccat > 1:1817956‑M1/1‑25 (MQ=255) aaaGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatc > 1:6322424‑M1/1‑24 (MQ=255) aaGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcc < 1:4719225‑M1/50‑28 (MQ=255) aaGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatccat < 1:5230482‑M1/48‑26 (MQ=255) agcagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcct < 1:356567‑M1/50‑29 (MQ=255) gcagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctc < 1:689710‑M1/50‑30 (MQ=255) cagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctct > 1:2687063‑M1/1‑20 (MQ=255) cagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctct < 1:4716096‑M1/50‑31 (MQ=255) agcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctg > 1:5433211‑M1/1‑19 (MQ=255) agcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctg < 1:4891885‑M1/50‑32 (MQ=255) agcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctg > 1:1677813‑M1/1‑19 (MQ=255) gcgcATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgc > 1:6663079‑M1/1‑18 (MQ=255) gcgcATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgc < 1:5962921‑M1/50‑33 (MQ=255) cgcATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgct < 1:1209135‑M1/50‑34 (MQ=255) gcATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgctt > 1:2760409‑M1/1‑16 (MQ=255) gcATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgctt > 1:5512399‑M1/1‑16 (MQ=255) gcATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgctt < 1:5806223‑M1/50‑35 (MQ=255) gcATCCGCAATGATGTggaacgcgcaatgacgatcatccaccctctgctt < 1:5683309‑M1/50‑35 (MQ=255) cATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttg < 1:1151001‑M1/50‑36 (MQ=255) cATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttg > 1:2451354‑M1/1‑15 (MQ=255) cATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttg < 1:3015544‑M1/50‑36 (MQ=255) aTCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgc > 1:1870175‑M1/1‑14 (MQ=255) aTCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgc > 1:6503656‑M1/1‑14 (MQ=255) tCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgcc < 1:66335‑M1/50‑38 (MQ=255) ccGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgc > 1:1094243‑M1/1‑12 (MQ=255) ccGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgc > 1:4409035‑M1/1‑12 (MQ=255) gCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgccagt < 1:3080019‑M1/50‑41 (MQ=255) cAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgccag > 1:353064‑M1/1‑9 (MQ=255) aaTGATGTggaacgcgcaatgacgatcatccatcctctgcttgccagtag > 1:345576‑M1/1‑8 (MQ=255) aaTGATGTggaacgcgcaatgacgatcatccatcctctgcttgccagtag > 1:3882271‑M1/1‑8 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagta < 1:3544262‑M1/50‑45 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagta < 1:6293891‑M1/50‑45 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagta < 1:2298790‑M1/50‑45 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagta < 1:6649208‑M1/50‑45 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtag > 1:875502‑M1/1‑6 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtag > 1:3455506‑M1/1‑6 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtag > 1:4455695‑M1/1‑6 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtag > 1:3859108‑M1/1‑6 (MQ=255) gatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagtag > 1:1324404‑M1/1‑5 (MQ=255) gatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagtag > 1:893010‑M1/1‑5 (MQ=255) atgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagc > 1:5271325‑M1/1‑4 (MQ=255) tgtggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagcg < 1:3907817‑M1/50‑48 (MQ=255) tggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagcgca < 1:396847‑M1/50‑50 (MQ=255) tggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagcgca > 1:6064277‑M1/1‑1 (MQ=255) tggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagcgca < 1:3676675‑M1/50‑50 (MQ=255) | TGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTA > NC_000913/508823‑508921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |