| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 75 [0] | [0] 78 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 73 (0.840) | 53/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040453‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:5228127/49‑1TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:1829315/49‑1 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG > 1:4783944/1‑50 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCA < 1:368914/49‑1 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCA < 1:4187118/49‑1 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT > 1:2604753/1‑50 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 1:179900/49‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT < 1:3779725/50‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:5439666/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT < 1:447642/50‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT < 1:5054504/50‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT < 1:3283102/49‑1 TTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:445680/1‑50 TTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:2073503/1‑49 TTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:462283/1‑49 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:4380917/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCG < 1:3901769/49‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCG < 1:581603/49‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:281359/48‑1 GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:3949441/1‑49 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT < 1:2055088/49‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT < 1:1723304/49‑1 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:6129267/1‑50 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:3005360/1‑50 TCGTCGGCATTTTGTCGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC > 1:3996383/1‑50 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:1159953/49‑1 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:3911720/49‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT < 1:2089671/49‑1 TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG > 1:3810683/1‑50 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:579274/1‑50 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:1461798/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:5962420/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:1431728/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG < 1:2119384/49‑1 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG < 1:6007217/49‑1 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG < 1:1721808/49‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:4805789/50‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:6565761/1‑49 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA < 1:5985110/50‑1 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:2441736/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT < 1:831882/50‑1 TTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:2169804/1‑50 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:1327548/1‑49 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:6225854/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG < 1:4673/49‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:532885/1‑50 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:2061405/1‑50 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACG < 1:6381758/50‑1 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA > 1:3391875/1‑50 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA > 1:3503326/1‑50 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC > 1:1472120/1‑50 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC > 1:2385596/1‑50 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACG < 1:4579991/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC > 1:3351728/1‑49 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:2724272/1‑50 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:3480858/1‑50 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:6668094/1‑50 GTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:2978854/1‑49 TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:1205173/1‑47 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA > 1:2663401/1‑50 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG < 1:6272561/49‑1 gtTCTCCATCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC > 1:6294933/3‑50 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 1:1970647/49‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 1:3643270/49‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:4798410/1‑50 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:6419676/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:2516436/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:499847/1‑50 CTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT > 1:2816443/1‑50 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT > 1:3103113/1‑50 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT < 1:1740954/48‑1 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA < 1:1293838/50‑1 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT > 1:6533998/1‑50 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG > 1:3827034/1‑49 TTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > 1:1266064/1‑50 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040453‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |