| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 75 [0] | [0] 78 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 73 (0.840) | 53/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
AAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAT > NC_000913/1114218‑1114313 | tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCa < 1:368914‑M2/2‑1 (MQ=255)tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCa < 1:4187118‑M2/2‑1 (MQ=255)tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCAg > 1:4783944‑M2/48‑50 (MQ=255) actttggttcgtcggcattttgttgatgtgttcgctctccacccttCAg < 1:179900‑M2/3‑1 (MQ=255) actttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGt > 1:2604753‑M2/47‑50 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGtt < 1:5054504‑M2/5‑1 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGtt < 1:3779725‑M2/5‑1 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGtt < 1:447642‑M2/5‑1 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGtt > 1:5439666‑M2/46‑50 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGt < 1:3283102‑M2/4‑1 (MQ=255) tttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc > 1:445680‑M2/45‑50 (MQ=255) ttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc > 1:2073503‑M2/44‑49 (MQ=255) ttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc > 1:462283‑M2/44‑49 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc < 1:281359‑M2/6‑1 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCg < 1:3901769‑M2/7‑1 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCg < 1:581603‑M2/7‑1 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:4380917‑M2/43‑50 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:3949441‑M2/42‑49 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGAt < 1:1723304‑M2/9‑1 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGAt < 1:2055088‑M2/9‑1 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc > 1:6129267‑M2/40‑50 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc > 1:3005360‑M2/40‑50 (MQ=255) tcgtcggcattttgtcgatgtgttcgctctccacccttCAGTTCGATAcc > 1:3996383‑M2/39‑50 (MQ=255) cgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAcc < 1:1159953‑M2/12‑1 (MQ=255) cgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAcc < 1:3911720‑M2/12‑1 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCt < 1:2089671‑M2/13‑1 (MQ=255) tcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgg > 1:3810683‑M2/36‑50 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:1461798‑M2/35‑50 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:579274‑M2/35‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:1431728‑M2/34‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:5962420‑M2/34‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg < 1:6007217‑M2/16‑1 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg < 1:2119384‑M2/16‑1 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg < 1:1721808‑M2/16‑1 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:6565761‑M2/33‑49 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGt < 1:4805789‑M2/18‑1 (MQ=255) cattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTa > 1:2441736‑M2/32‑50 (MQ=255) cattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTa < 1:5985110‑M2/19‑1 (MQ=255) attttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAt < 1:831882‑M2/20‑1 (MQ=255) tttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:2169804‑M2/29‑50 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:1327548‑M2/28‑49 (MQ=255) tgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcga > 1:6225854‑M2/27‑50 (MQ=255) tgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcg < 1:4673‑M2/23‑1 (MQ=255) gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac > 1:2061405‑M2/26‑50 (MQ=255) gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac > 1:532885‑M2/26‑50 (MQ=255) ttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacg < 1:6381758‑M2/26‑1 (MQ=255) tgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacga > 1:3503326‑M2/24‑50 (MQ=255) tgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacga > 1:3391875‑M2/24‑50 (MQ=255) gatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac > 1:2385596‑M2/23‑50 (MQ=255) gatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac > 1:1472120‑M2/23‑50 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacg < 1:4579991‑M2/29‑1 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac > 1:3351728‑M2/22‑49 (MQ=255) gtgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac > 1:2724272‑M2/20‑50 (MQ=255) gtgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac > 1:3480858‑M2/20‑50 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:6668094‑M2/19‑50 (MQ=255) gttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:2978854‑M2/18‑49 (MQ=255) tcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:1205173‑M2/16‑47 (MQ=255) cgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAg < 1:6272561‑M2/35‑1 (MQ=255) cgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGa > 1:2663401‑M2/15‑50 (MQ=255) gttctccatccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAc > 1:6294933‑M2/14‑50 (MQ=255) gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGa < 1:1970647‑M2/36‑1 (MQ=255) gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGa < 1:3643270‑M2/36‑1 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt > 1:4798410‑M2/13‑50 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt > 1:6419676‑M2/13‑50 (MQ=255) tctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg > 1:499847‑M2/12‑50 (MQ=255) tctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg > 1:2516436‑M2/12‑50 (MQ=255) ctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGt > 1:2816443‑M2/11‑50 (MQ=255) tccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGtt > 1:3103113‑M2/10‑50 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGtt < 1:1740954‑M2/41‑1 (MQ=255) acccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCa < 1:1293838‑M2/44‑1 (MQ=255) cccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAt > 1:6533998‑M2/6‑50 (MQ=255) cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATg > 1:3827034‑M2/4‑49 (MQ=255) ttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa > 1:1266064‑M2/3‑50 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa < 1:5552950/48‑1 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa > 1:3275429/1‑48 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa > 1:2425720/1‑48 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa > 1:757111/1‑48 (MQ=255) cAGTGCGATGCCGGGGGTAGTCGACGACGACGTAGACTGTTCCATGAAt < 1:676257/49‑1 (MQ=255) | AAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAT > NC_000913/1114218‑1114313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |