| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 75 [0] | [0] 78 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 73 (0.840) | 53/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC > NC_000913/1040453‑1040549 | tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:5228127‑M1/49‑1 (MQ=255)tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:1829315‑M1/49‑1 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag > 1:4783944‑M1/1‑47 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTca < 1:368914‑M1/49‑3 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTca < 1:4187118‑M1/49‑3 (MQ=255) aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagt > 1:2604753‑M1/1‑46 (MQ=255) aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag < 1:179900‑M1/49‑4 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt < 1:3779725‑M1/50‑6 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt > 1:5439666‑M1/1‑45 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt < 1:447642‑M1/50‑6 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt < 1:5054504‑M1/50‑6 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagt < 1:3283102‑M1/49‑5 (MQ=255) tttGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc > 1:445680‑M1/1‑44 (MQ=255) ttGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc > 1:2073503‑M1/1‑43 (MQ=255) ttGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc > 1:462283‑M1/1‑43 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 1:4380917‑M1/1‑42 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcg < 1:3901769‑M1/49‑8 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcg < 1:581603‑M1/49‑8 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc < 1:281359‑M1/48‑7 (MQ=255) ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 1:3949441‑M1/1‑41 (MQ=255) gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgat < 1:2055088‑M1/49‑10 (MQ=255) gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgat < 1:1723304‑M1/49‑10 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac > 1:6129267‑M1/1‑39 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac > 1:3005360‑M1/1‑39 (MQ=255) tcgtcgGCATTTTGTCGATGTGTTCGCTCTCCACCCTTcagttcgatacc > 1:3996383‑M1/1‑38 (MQ=255) cgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacc < 1:1159953‑M1/49‑13 (MQ=255) cgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacc < 1:3911720‑M1/49‑13 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacct < 1:2089671‑M1/49‑14 (MQ=255) tcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgg > 1:3810683‑M1/1‑35 (MQ=255) cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg > 1:579274‑M1/1‑34 (MQ=255) cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg > 1:1461798‑M1/1‑34 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:5962420‑M1/1‑33 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:1431728‑M1/1‑33 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg < 1:2119384‑M1/49‑17 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg < 1:6007217‑M1/49‑17 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg < 1:1721808‑M1/49‑17 (MQ=255) gCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggt < 1:4805789‑M1/50‑19 (MQ=255) gCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:6565761‑M1/1‑32 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta < 1:5985110‑M1/50‑20 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 1:2441736‑M1/1‑31 (MQ=255) aTTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtat < 1:831882‑M1/50‑21 (MQ=255) tttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc > 1:2169804‑M1/1‑28 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc > 1:1327548‑M1/1‑27 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcga > 1:6225854‑M1/1‑26 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcg < 1:4673‑M1/49‑24 (MQ=255) gttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac > 1:532885‑M1/1‑25 (MQ=255) gttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac > 1:2061405‑M1/1‑25 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacg < 1:6381758‑M1/50‑27 (MQ=255) tgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacga > 1:3391875‑M1/1‑23 (MQ=255) tgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacga > 1:3503326‑M1/1‑23 (MQ=255) gATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:1472120‑M1/1‑22 (MQ=255) gATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:2385596‑M1/1‑22 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacg < 1:4579991‑M1/50‑30 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:3351728‑M1/1‑21 (MQ=255) gtgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac > 1:2724272‑M1/1‑19 (MQ=255) gtgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac > 1:3480858‑M1/1‑19 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:6668094‑M1/1‑18 (MQ=255) gtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:2978854‑M1/1‑17 (MQ=255) tCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:1205173‑M1/1‑15 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga > 1:2663401‑M1/1‑14 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtag < 1:6272561‑M1/49‑36 (MQ=255) gttctccaTCCTTcagttcgatacctggggtattcgacgacgacgtagac > 1:6294933‑M1/3‑13 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga < 1:1970647‑M1/49‑37 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga < 1:3643270‑M1/49‑37 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact > 1:4798410‑M1/1‑12 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact > 1:6419676‑M1/1‑12 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:2516436‑M1/1‑11 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:499847‑M1/1‑11 (MQ=255) ctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt > 1:2816443‑M1/1‑10 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt > 1:3103113‑M1/1‑9 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt < 1:1740954‑M1/48‑42 (MQ=255) aCCCTTcagttcgatacctggggtattcgacgacgacgtagactgttcca < 1:1293838‑M1/50‑45 (MQ=255) cccTTcagttcgatacctggggtattcgacgacgacgtagactgttccat > 1:6533998‑M1/1‑5 (MQ=255) cTTcagttcgatacctggggtattcgacgacgacgtagactgttccatg > 1:3827034‑M1/1‑3 (MQ=255) ttcagttcgatacctggggtattcgacgacgacgtagactgttccatgaa > 1:1266064‑M1/1‑2 (MQ=255) | TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC > NC_000913/1040453‑1040549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |