| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 104 [0] | [0] 101 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 100 (1.150) | 60/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 104 total aligned reads displayed.
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT < 1:3121134/50‑1AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:3411346/1‑50AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:1922170/1‑50 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC < 1:3031866/50‑1 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC > 1:1331288/1‑50 ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:2350749/1‑50 ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:4117335/1‑50 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:5709087/1‑49 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:6525304/1‑49 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:2303771/1‑49 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:1833409/1‑49 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 1:2988790/1‑50 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 1:299579/1‑50 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA < 1:78762/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:3434128/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:3268775/50‑1 CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG > 1:5523440/1‑50 CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG > 1:1177559/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:3853443/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:4334857/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG < 1:1780859/49‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG < 1:1503354/49‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGGGCGCGTCGCTACGCT < 1:3096194/50‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:2938984/1‑49 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 1:1477867/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC < 1:2775055/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG > 1:4521703/1‑49 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:5890044/1‑49 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:5264976/49‑1 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC < 1:4626520/49‑1 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC < 1:3217942/49‑1 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA > 1:792856/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGCCGCTACGCTAGCAAGCAA > 1:2289089/1‑49 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 1:6009699/50‑1 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA > 1:2494388/1‑50 GAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:2038876/1‑50 GAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:3380726/1‑50 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:347156/50‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:1952193/50‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:3220299/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:1375577/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:5824540/49‑1 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA > 1:5671534/1‑49 TATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:6184018/1‑50 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA < 1:4743275/49‑1 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA < 1:4257359/49‑1 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA < 1:6651320/50‑1 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:4236924/1‑48 TAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:5150184/1‑50 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG < 1:4669414/49‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG < 1:4741974/49‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA < 1:2714349/50‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA < 1:4476085/50‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 1:2938575/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 1:1515429/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG < 1:5138345/49‑1 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA > 1:3859999/1‑50 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA > 1:257108/1‑50 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:6384622/50‑1 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:2712892/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATA < 1:6447472/50‑1 TACTCGCGAGCGCGTCGTTACGCTAGCAAGCAAAAATGAAACAGGAATAA < 1:6123626/50‑1 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA < 1:5749068/50‑1 ACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT > 1:3504265/1‑50 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC < 1:2375533/50‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC < 1:55406/50‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:1310938/49‑1 TCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC > 1:2963065/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATTAAACAGGAATAATCGA > 1:6205617/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAA < 1:1038049/50‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAA < 1:1299591/50‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA > 1:5074873/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA < 1:1994410/49‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 1:987822/48‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 1:3940139/48‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 1:374805/48‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA < 1:3792898/50‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > 1:3449143/1‑50 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > 1:3195380/1‑50 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > 1:2937844/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:5812199/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:1136938/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:1573287/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:5926415/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:2614747/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:4391561/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:4246911/1‑50 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG > 1:1606438/1‑50 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 1:2906759/50‑1 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 1:5585293/50‑1 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG > 1:1798181/1‑50 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 1:123230/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG < 1:1693141/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG < 1:4821332/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG > 1:3175761/1‑49 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA > 1:1581677/1‑50 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA < 1:4051639/50‑1 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA < 1:1006519/50‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 1:1860895/1‑50 TCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT < 1:3069750/50‑1 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |