| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 104 [0] | [0] 101 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 100 (1.150) | 60/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 104 total aligned reads displayed.
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 | aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT < 1:3121134‑M1/50‑1 (MQ=255)aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:3411346‑M1/1‑50 (MQ=255)aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:1922170‑M1/1‑50 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:3031866‑M1/50‑2 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc > 1:1331288‑M1/1‑49 (MQ=255) aCATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:2350749‑M1/1‑47 (MQ=255) aCATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:4117335‑M1/1‑47 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:5709087‑M1/1‑46 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:6525304‑M1/1‑46 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:2303771‑M1/1‑46 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:1833409‑M1/1‑46 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:2988790‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:299579‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta < 1:78762‑M1/50‑6 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:3434128‑M1/50‑7 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:3268775‑M1/50‑7 (MQ=255) cGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg > 1:5523440‑M1/1‑43 (MQ=255) cGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg > 1:1177559‑M1/1‑43 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:3853443‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:4334857‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg < 1:1780859‑M1/49‑8 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg < 1:1503354‑M1/49‑8 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGGGCGCGTcgctacgct < 1:3096194‑M1/50‑10 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:2938984‑M1/1‑41 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:1477867‑M1/50‑11 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc < 1:2775055‑M1/50‑13 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:4521703‑M1/1‑38 (MQ=255) tttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc > 1:5890044‑M1/1‑37 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag < 1:5264976‑M1/49‑16 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc < 1:4626520‑M1/49‑17 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc < 1:3217942‑M1/49‑17 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa > 1:792856‑M1/1‑31 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGCcgctacgctagcaagcaa > 1:2289089‑M1/1‑31 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:6009699‑M1/50‑21 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 1:2494388‑M1/1‑29 (MQ=255) gAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:2038876‑M1/1‑28 (MQ=255) gAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:3380726‑M1/1‑28 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:347156‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:1952193‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:3220299‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:1375577‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:5824540‑M1/49‑23 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga > 1:5671534‑M1/1‑25 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:6184018‑M1/1‑24 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa < 1:4743275‑M1/49‑27 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa < 1:4257359‑M1/49‑27 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaaca < 1:6651320‑M1/50‑29 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:4236924‑M1/1‑22 (MQ=255) taAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:5150184‑M1/1‑21 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag < 1:4669414‑M1/49‑30 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag < 1:4741974‑M1/49‑30 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagga < 1:2714349‑M1/50‑32 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagga < 1:4476085‑M1/50‑32 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg > 1:2938575‑M1/1‑19 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg > 1:1515429‑M1/1‑19 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg < 1:5138345‑M1/49‑31 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:3859999‑M1/1‑18 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:257108‑M1/1‑18 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:6384622‑M1/50‑34 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:2712892‑M1/50‑34 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaata < 1:6447472‑M1/50‑35 (MQ=255) tACTCGCGAGCGCGTcgttacgctagcaagcaaaaatgaaacaggaataa < 1:6123626‑M1/50‑36 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:5749068‑M1/50‑36 (MQ=255) aCTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat > 1:3504265‑M1/1‑14 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc < 1:2375533‑M1/50‑38 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc < 1:55406‑M1/50‑38 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat < 1:1310938‑M1/49‑37 (MQ=255) tCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc > 1:2963065‑M1/1‑12 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaattaaacaggaataatcga > 1:6205617‑M1/1‑10 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaa < 1:1038049‑M1/50‑41 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaa < 1:1299591‑M1/50‑41 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga > 1:5074873‑M1/1‑10 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga < 1:1994410‑M1/49‑40 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg < 1:987822‑M1/48‑39 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg < 1:3940139‑M1/48‑39 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg < 1:374805‑M1/48‑39 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa < 1:3792898‑M1/50‑42 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:3449143‑M1/1‑9 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:3195380‑M1/1‑9 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:2937844‑M1/1‑9 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:5812199‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:1136938‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:1573287‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:5926415‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:2614747‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:4391561‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:4246911‑M1/1‑8 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg > 1:1606438‑M1/1‑7 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:2906759‑M1/50‑45 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:5585293‑M1/50‑45 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:1798181‑M1/1‑6 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:123230‑M1/50‑45 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg < 1:1693141‑M1/50‑46 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg < 1:4821332‑M1/50‑46 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:3175761‑M1/1‑5 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga > 1:1581677‑M1/1‑4 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga < 1:4051639‑M1/50‑47 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga < 1:1006519‑M1/50‑47 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg > 1:1860895‑M1/1‑2 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt < 1:3069750‑M1/50‑50 (MQ=255) | AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |