| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 104 [0] | [0] 101 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 100 (1.150) | 60/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 101 total aligned reads displayed.
TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979281‑1979378 | agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:3031866‑M2/1‑1 (MQ=255)agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc > 1:1331288‑M2/50‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:4117335‑M2/48‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:2350749‑M2/48‑50 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:5709087‑M2/47‑49 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:1833409‑M2/47‑49 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:6525304‑M2/47‑49 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:2303771‑M2/47‑49 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta > 1:299579‑M2/46‑50 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta > 1:2988790‑M2/46‑50 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta < 1:78762‑M2/5‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:3434128‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:3268775‑M2/6‑1 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:5523440‑M2/44‑50 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:1177559‑M2/44‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:3853443‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:4334857‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg < 1:1503354‑M2/7‑1 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg < 1:1780859‑M2/7‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgggcgcgtcgctacgct < 1:3096194‑M2/9‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:2938984‑M2/42‑49 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:1477867‑M2/10‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc < 1:2775055‑M2/12‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:4521703‑M2/39‑49 (MQ=255) tttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc > 1:5890044‑M2/38‑49 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:485312‑M2/13‑1 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag < 1:5264976‑M2/15‑1 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc < 1:3217942‑M2/16‑1 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc < 1:4626520‑M2/16‑1 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAgcaagcaa > 1:792856‑M2/32‑49 (MQ=255) actgagttattaaacatactcgcgagcgcgcCGCTACGCTAgcaagcaa > 1:2289089‑M2/32‑49 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 1:6009699‑M2/20‑1 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:2494388‑M2/30‑50 (MQ=255) gagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:3380726‑M2/29‑50 (MQ=255) gagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:2038876‑M2/29‑50 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:5824540‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:1375577‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:3220299‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg < 1:1952193‑M2/23‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg < 1:347156‑M2/23‑1 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa > 1:5671534‑M2/26‑49 (MQ=255) tattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:6184018‑M2/25‑50 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa < 1:4257359‑M2/26‑1 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa < 1:4743275‑M2/26‑1 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:4236924‑M2/23‑48 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACa < 1:6651320‑M2/28‑1 (MQ=255) taaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:5150184‑M2/22‑50 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg < 1:4741974‑M2/29‑1 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg < 1:4669414‑M2/29‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg < 1:5138345‑M2/30‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg > 1:1515429‑M2/20‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg > 1:2938575‑M2/20‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGa < 1:4476085‑M2/31‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGa < 1:2714349‑M2/31‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:3859999‑M2/19‑50 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:257108‑M2/19‑50 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:6384622‑M2/33‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:2712892‑M2/33‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:2290470‑M2/18‑49 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:6447472‑M2/34‑1 (MQ=255) tactcgcgagcgcgtCGTTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:6123626‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:5749068‑M2/35‑1 (MQ=255) actcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat > 1:3504265‑M2/15‑50 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat < 1:1310938‑M2/36‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:329336‑M2/14‑50 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc < 1:55406‑M2/37‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc < 1:2375533‑M2/37‑1 (MQ=255) tcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:2963065‑M2/13‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATTAAACAGGAATAATCGa > 1:6205617‑M2/11‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 1:987822‑M2/38‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 1:3940139‑M2/38‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 1:374805‑M2/38‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa < 1:1038049‑M2/40‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa < 1:1299591‑M2/40‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 1:5074873‑M2/11‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa < 1:1994410‑M2/39‑1 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:3792898‑M2/41‑1 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:3449143‑M2/10‑50 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:3195380‑M2/10‑50 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:2937844‑M2/10‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:4246911‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:1136938‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:1573287‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:5926415‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:2614747‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:5812199‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:4391561‑M2/9‑50 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg > 1:1606438‑M2/8‑50 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:2906759‑M2/44‑1 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:5585293‑M2/44‑1 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:1798181‑M2/7‑50 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:123230‑M2/44‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg < 1:1693141‑M2/45‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg < 1:4821332‑M2/45‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:3175761‑M2/6‑49 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa > 1:1581677‑M2/5‑50 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 1:4051639‑M2/46‑1 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 1:1006519‑M2/46‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg > 1:1860895‑M2/3‑50 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:3069750‑M2/49‑1 (MQ=255) | TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979281‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |