| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 52 [0] | [0] 55 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 49 (0.580) +GA |
42/94 | 0.2 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:849030/50‑1AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 1:2644959/1‑49 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:5241138/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:3239510/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 1:3776501/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:2112275/1‑50 TCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:5253591/1‑49 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:3184393/49‑1 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:5281808/49‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:1825065/50‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA < 1:3329004/47‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:3744278/1‑50 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG < 1:6255694/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:4481313/1‑49 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:3178385/1‑49 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGA < 1:1474529/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:4702539/1‑50 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 1:6560574/50‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:4203854/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 1:4969437/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 1:2252139/50‑1 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 1:4127072/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 1:2679847/1‑49 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:1384657/50‑1 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:449472/1‑50 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG < 1:1081037/49‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG < 1:1814944/49‑1 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA < 1:2191397/50‑1 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA < 1:4485479/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:5467919/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC > 1:3172111/1‑50 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:279643/50‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 1:2344601/49‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:6114814/1‑49 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGC < 1:3434073/49‑1 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:885888/1‑50 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:1007751/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:3255205/50‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:4286606/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:184677/1‑49 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:3365208/1‑48 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 1:2274832/1‑50 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT < 1:521312/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:955586/1‑49 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC < 1:1260173/50‑1 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC > 1:418902/1‑50 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:537897/1‑50 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT < 1:930040/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 1:429507/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:4887275/1‑49 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:260194/50‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:2099685/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:2132872/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:5446874/49‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC < 1:5451621/50‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:249349/1‑49 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |