| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 52 [0] | [0] 55 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 49 (0.580) +GA |
42/94 | 0.2 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCAC > NC_000913/3110630‑3110727 | ccAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCata < 1:4176516/50‑1 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 1:849030‑M1/50‑3 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg > 1:2644959‑M1/1‑48 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 1:5241138‑M1/50‑4 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac > 1:3776501‑M1/1‑46 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:3239510‑M1/50‑5 (MQ=255) ttCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:2112275‑M1/1‑44 (MQ=255) tctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:5253591‑M1/1‑43 (MQ=255) ctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgcc < 1:5281808‑M1/49‑8 (MQ=255) ctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgcc < 1:3184393‑M1/49‑8 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt < 1:1825065‑M1/50‑12 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgcca < 1:3329004‑M1/47‑9 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt > 1:3744278‑M1/1‑38 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg < 1:6255694‑M1/50‑14 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt > 1:4481313‑M1/1‑37 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt > 1:3178385‑M1/1‑37 (MQ=255) agcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttga < 1:1474529‑M1/50‑15 (MQ=255) gcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaa > 1:4702539‑M1/1‑35 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat < 1:6560574‑M1/50‑17 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt < 1:4203854‑M1/50‑18 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattt < 1:4969437‑M1/50‑19 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattt < 1:2252139‑M1/50‑19 (MQ=255) tGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattta > 1:4127072‑M1/1‑31 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 1:2679847‑M1/1‑29 (MQ=255) tCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaac < 1:1384657‑M1/50‑25 (MQ=255) cAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg > 1:449472‑M1/1‑25 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg < 1:1081037‑M1/49‑26 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg < 1:1814944‑M1/49‑26 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgga < 1:2191397‑M1/50‑28 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgga < 1:4485479‑M1/50‑28 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:279643‑M1/50‑29 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:5467919‑M1/50‑29 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac > 1:3172111‑M1/1‑22 (MQ=255) tgtgTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg > 1:6114814‑M1/1‑20 (MQ=255) tgtgTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg < 1:2344601‑M1/49‑30 (MQ=255) gtgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgc < 1:3434073‑M1/49‑31 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat > 1:885888‑M1/1‑18 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatt < 1:1007751‑M1/49‑34 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatc < 1:3255205‑M1/50‑37 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:4286606‑M1/1‑14 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:184677‑M1/1‑14 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:3365208‑M1/1‑13 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag > 1:2274832‑M1/1‑12 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt < 1:521312‑M1/50‑40 (MQ=255) gCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 1:955586‑M1/1‑10 (MQ=255) aGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtgac < 1:1260173‑M1/50‑43 (MQ=255) aGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtgac > 1:418902‑M1/1‑8 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:537897‑M1/1‑6 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt < 1:930040‑M1/50‑45 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttta < 1:429507‑M1/50‑47 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt > 1:4887275‑M1/1‑4 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac < 1:260194‑M1/50‑49 (MQ=255) | CCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCAC > NC_000913/3110630‑3110727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |