| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 52 [0] | [0] 55 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 49 (0.580) +GA |
42/94 | 0.2 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 | ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:5241138‑M2/1‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:3239510‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc > 1:3776501‑M2/49‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:2112275‑M2/47‑50 (MQ=255) tctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:5253591‑M2/46‑49 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGcc < 1:5281808‑M2/5‑1 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGcc < 1:3184393‑M2/5‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa < 1:3329004‑M2/6‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt < 1:1825065‑M2/9‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:3744278‑M2/41‑50 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:3178385‑M2/40‑49 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:4481313‑M2/40‑49 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg < 1:6255694‑M2/11‑1 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGa < 1:1474529‑M2/12‑1 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa > 1:4702539‑M2/38‑50 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 1:6560574‑M2/14‑1 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:4203854‑M2/15‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:2252139‑M2/16‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:4969437‑M2/16‑1 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:4127072‑M2/34‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:2679847‑M2/32‑49 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:1384657‑M2/22‑1 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:449472‑M2/28‑50 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg < 1:1081037‑M2/23‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg < 1:1814944‑M2/23‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGa < 1:2191397‑M2/25‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGa < 1:4485479‑M2/25‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc > 1:3172111‑M2/25‑50 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:279643‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:5467919‑M2/26‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg > 1:6114814‑M2/23‑49 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:2344601‑M2/27‑1 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGc < 1:3434073‑M2/28‑1 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt > 1:885888‑M2/21‑50 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAtt < 1:1007751‑M2/31‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:184677‑M2/17‑49 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:4286606‑M2/17‑49 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:3255205‑M2/34‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:3365208‑M2/16‑48 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:2274832‑M2/15‑50 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt < 1:521312‑M2/37‑1 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:955586‑M2/13‑49 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc < 1:1260173‑M2/40‑1 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc > 1:418902‑M2/11‑50 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:537897‑M2/9‑50 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt < 1:930040‑M2/42‑1 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:4887275‑M2/7‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:429507‑M2/44‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:260194‑M2/46‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:2099685‑M2/3‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:2132872‑M2/47‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:5446874‑M2/47‑1 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:249349‑M2/2‑49 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGc < 1:5451621‑M2/49‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa > 1:5513053/1‑50 (MQ=255) | CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |