| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 78 [0] | [0] 78 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 77 (0.890) | 53/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888383‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 AAAACTCTGAGTGTAATAATTTAGCCTCGTGTCTTGCGAGGATAAGTGCC < 1:3775121/50‑1AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC < 1:1343313/50‑1 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCG < 1:2037754/50‑1 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:2560155/1‑49 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:6264289/1‑49 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:1763696/1‑49 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC < 1:5659847/50‑1 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC < 1:2670784/50‑1 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:4223906/1‑50 TCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:2067548/1‑50 CTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:4616093/1‑49 CTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:6000201/1‑49 GAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:4745287/1‑50 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA < 1:605400/48‑1 GTGTAATAATGTAGCCGCGTGTCTTGCGAGGATAAGTGCCGACTTCACCA < 1:767316/50‑1 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:6001455/1‑50 GTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:1529055/1‑49 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA > 1:4604049/1‑50 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTAACCAGT < 1:3252947/49‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:4428268/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:3648364/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:6229895/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:6586033/49‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:1646494/49‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC < 1:5134874/50‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:2895892/1‑50 AATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT > 1:2044964/1‑50 AATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT > 1:2125833/1‑50 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC < 1:6320384/50‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC > 1:1596925/1‑50 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT < 1:1248581/49‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT < 1:5048524/50‑1 GTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG > 1:5932217/1‑50 GTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG > 1:1967269/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG < 1:3698979/50‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:4741135/49‑1 AGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT > 1:5764787/1‑50 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT > 1:6085515/1‑49 CCTCGTGTCTTGCGATGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:302942/50‑1 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA > 1:2046878/1‑50 TCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG > 1:4550572/1‑50 TCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG > 1:5768177/1‑50 CGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:3657377/1‑50 CGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:3573342/1‑50 CGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:168935/1‑50 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:2154430/50‑1 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:5639029/1‑50 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG < 1:4052802/50‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG < 1:696634/50‑1 CTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGT > 1:4595966/1‑50 TTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT > 1:6512423/1‑50 TGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT > 1:5852000/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT < 1:6332474/49‑1 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT < 1:2559655/48‑1 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT < 1:2447478/48‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC < 1:3785211/50‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC > 1:2361964/1‑50 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC > 1:298317/1‑50 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC < 1:2551715/50‑1 AGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCC > 1:1789798/1‑50 GGATACGTGCCTACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT > 1:6103560/1‑50 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:5671667/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:4592997/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:1563759/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:1918503/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC < 1:253806/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC < 1:973101/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:3255103/1‑50 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC < 1:4370330/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC < 1:5786251/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:5108848/1‑50 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA > 1:2953904/1‑50 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA > 1:1486825/1‑50 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGA < 1:1671360/49‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 1:6583405/50‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 1:899853/50‑1 GCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 1:3066715/1‑49 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA < 1:2223491/50‑1 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888383‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |