| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 78 [0] | [0] 78 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 77 (0.890) | 53/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906550‑3906647 | aaaactctgagtgtaataatttagcctcgtgtcttgcgaggataagtgcc < 1:3775121‑M2/1‑1 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:1343313‑M2/1‑1 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:2560155‑M2/49‑49 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:6264289‑M2/49‑49 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:1763696‑M2/49‑49 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCg < 1:2037754‑M2/2‑1 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc < 1:5659847‑M2/4‑1 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc < 1:2670784‑M2/4‑1 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt > 1:4223906‑M2/46‑50 (MQ=255) tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:2067548‑M2/45‑50 (MQ=255) ctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:4616093‑M2/44‑49 (MQ=255) ctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:6000201‑M2/44‑49 (MQ=255) gagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:4745287‑M2/42‑50 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa < 1:605400‑M2/8‑1 (MQ=255) gtgtaataatgtagccgcgtgtcttgcgaggataagtgcCGACTTCACCa < 1:767316‑M2/11‑1 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:6001455‑M2/39‑50 (MQ=255) gtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:1529055‑M2/38‑49 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa > 1:4604049‑M2/37‑50 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTAACCAGt < 1:3252947‑M2/13‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:4428268‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:3648364‑M2/16‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:6229895‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt < 1:6586033‑M2/15‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt < 1:1646494‑M2/15‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc < 1:5134874‑M2/17‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:2895892‑M2/34‑50 (MQ=255) aatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct > 1:2044964‑M2/33‑50 (MQ=255) aatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct > 1:2125833‑M2/33‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc < 1:6320384‑M2/19‑1 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc > 1:1596925‑M2/32‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct < 1:1248581‑M2/18‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:5048524‑M2/20‑1 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg > 1:5932217‑M2/30‑50 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg > 1:1967269‑M2/30‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg < 1:3698979‑M2/22‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg < 1:4741135‑M2/21‑1 (MQ=255) agcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 1:5764787‑M2/28‑50 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 1:6085515‑M2/27‑49 (MQ=255) cctcgtgtcttgcgatgataagtgcCGACTTCACCAGTATTCTCTGGTTa < 1:302942‑M2/25‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa > 1:2046878‑M2/26‑50 (MQ=255) tcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 1:4550572‑M2/24‑50 (MQ=255) tcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 1:5768177‑M2/24‑50 (MQ=255) cgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:3657377‑M2/23‑50 (MQ=255) cgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:3573342‑M2/23‑50 (MQ=255) cgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:168935‑M2/23‑50 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:2154430‑M2/30‑1 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg > 1:5639029‑M2/20‑50 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg < 1:4052802‑M2/32‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg < 1:696634‑M2/32‑1 (MQ=255) cttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt > 1:4595966‑M2/18‑50 (MQ=255) ttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt > 1:6512423‑M2/17‑50 (MQ=255) tgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGttt > 1:5852000‑M2/16‑50 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGttt < 1:6332474‑M2/35‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt < 1:2559655‑M2/34‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt < 1:2447478‑M2/34‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc < 1:3785211‑M2/38‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc > 1:2361964‑M2/13‑50 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc > 1:298317‑M2/13‑50 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc < 1:2551715‑M2/38‑1 (MQ=255) aggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGcc > 1:1789798‑M2/12‑50 (MQ=255) ggatacgtgcCTACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt > 1:6103560‑M2/11‑50 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt < 1:5671667‑M2/40‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:4592997‑M2/41‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:1563759‑M2/41‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:1918503‑M2/41‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 1:253806‑M2/42‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 1:973101‑M2/42‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc > 1:3255103‑M2/9‑50 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 1:4370330‑M2/42‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 1:5786251‑M2/42‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc > 1:5108848‑M2/9‑50 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGaa > 1:2953904‑M2/6‑50 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGaa > 1:1486825‑M2/6‑50 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGa < 1:1671360‑M2/44‑1 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 1:6583405‑M2/46‑1 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 1:899853‑M2/46‑1 (MQ=255) gcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg > 1:3066715‑M2/3‑49 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCa < 1:2223491‑M2/49‑1 (MQ=255) | GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906550‑3906647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |