| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 78 [0] | [0] 78 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 77 (0.890) | 53/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTG > NC_000913/3888383‑3888480 | aaaaCTCTGAGTGTAATAATTTAGCCTCGTGTCTTGCGAGGATAAGTGCc < 1:3775121‑M1/50‑2 (MQ=255)aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc < 1:1343313‑M1/50‑2 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcg < 1:2037754‑M1/50‑3 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:2560155‑M1/1‑48 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:6264289‑M1/1‑48 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:1763696‑M1/1‑48 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac < 1:5659847‑M1/50‑5 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac < 1:2670784‑M1/50‑5 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 1:4223906‑M1/1‑45 (MQ=255) tctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:2067548‑M1/1‑44 (MQ=255) ctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:4616093‑M1/1‑43 (MQ=255) ctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:6000201‑M1/1‑43 (MQ=255) gAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac > 1:4745287‑M1/1‑41 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttca < 1:605400‑M1/48‑9 (MQ=255) gtgtAATAATGTAGCCGCGTGTCTTGCGAGGATAAGTGCcgacttcacca < 1:767316‑M1/50‑12 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:6001455‑M1/1‑38 (MQ=255) gtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:1529055‑M1/1‑37 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta > 1:4604049‑M1/1‑36 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttaaccagt < 1:3252947‑M1/49‑14 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:4428268‑M1/1‑34 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt < 1:3648364‑M1/50‑17 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:6229895‑M1/1‑34 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat < 1:6586033‑M1/49‑16 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat < 1:1646494‑M1/49‑16 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc < 1:5134874‑M1/50‑18 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc > 1:2895892‑M1/1‑33 (MQ=255) aatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattct > 1:2044964‑M1/1‑32 (MQ=255) aatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattct > 1:2125833‑M1/1‑32 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc < 1:6320384‑M1/50‑20 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc > 1:1596925‑M1/1‑31 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattct < 1:1248581‑M1/49‑19 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct < 1:5048524‑M1/50‑21 (MQ=255) gTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg > 1:5932217‑M1/1‑29 (MQ=255) gTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg > 1:1967269‑M1/1‑29 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg < 1:3698979‑M1/50‑23 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg < 1:4741135‑M1/49‑22 (MQ=255) aGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 1:5764787‑M1/1‑27 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 1:6085515‑M1/1‑26 (MQ=255) ccTCGTGTCTTGCGATGATAAGTGCcgacttcaccagtattctctggtta < 1:302942‑M1/50‑26 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtta > 1:2046878‑M1/1‑25 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg > 1:4550572‑M1/1‑23 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg > 1:5768177‑M1/1‑23 (MQ=255) cGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:3657377‑M1/1‑22 (MQ=255) cGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:3573342‑M1/1‑22 (MQ=255) cGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:168935‑M1/1‑22 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 1:2154430‑M1/50‑31 (MQ=255) gtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag > 1:5639029‑M1/1‑19 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcagg < 1:4052802‑M1/50‑33 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcagg < 1:696634‑M1/50‑33 (MQ=255) cTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggt > 1:4595966‑M1/1‑17 (MQ=255) ttGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt > 1:6512423‑M1/1‑16 (MQ=255) tGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt > 1:5852000‑M1/1‑15 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt < 1:6332474‑M1/49‑36 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt < 1:2559655‑M1/48‑35 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt < 1:2447478‑M1/48‑35 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc < 1:3785211‑M1/50‑39 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:2361964‑M1/1‑12 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:298317‑M1/1‑12 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc < 1:2551715‑M1/50‑39 (MQ=255) aGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcc > 1:1789798‑M1/1‑11 (MQ=255) ggATACGTGCctacttcaccagtattctctggttatgtcaggttttgcct > 1:6103560‑M1/1‑10 (MQ=255) ggATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcct < 1:5671667‑M1/50‑41 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:4592997‑M1/50‑42 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:1563759‑M1/50‑42 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:1918503‑M1/50‑42 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:253806‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:973101‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc > 1:3255103‑M1/1‑8 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:4370330‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:5786251‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc > 1:5108848‑M1/1‑8 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaa > 1:2953904‑M1/1‑5 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaa > 1:1486825‑M1/1‑5 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcga < 1:1671360‑M1/49‑45 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat < 1:6583405‑M1/50‑47 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat < 1:899853‑M1/50‑47 (MQ=255) gCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:3066715‑M1/1‑2 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatgca < 1:2223491‑M1/50‑50 (MQ=255) | AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTG > NC_000913/3888383‑3888480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |