| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 98 [0] | [0] 101 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 92 (1.040) | 57/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA < 1:6162423/50‑1ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA > 1:6401824/1‑50ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA < 1:2999345/50‑1ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA < 1:2571315/50‑1 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:3515659/1‑50 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT < 1:1092374/50‑1 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT < 1:5602077/50‑1 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:4874126/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:268173/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:1284087/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:5200123/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:1003943/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:3952359/1‑50 GGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:6085369/1‑49 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 1:3894473/50‑1 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 1:4790971/50‑1 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 1:5761577/50‑1 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG < 1:1162922/50‑1 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG < 1:2670762/50‑1 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC < 1:1557857/50‑1 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC > 1:6414258/1‑50 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC > 1:5358579/1‑50 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 1:2795906/1‑50 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 1:2544371/1‑50 TGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT > 1:5947143/1‑50 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCC < 1:3776695/50‑1 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:2333152/48‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC < 1:4053489/50‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC < 1:5202298/50‑1 TGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 1:3414778/1‑49 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:1267594/48‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:6425530/48‑1 tgCCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAA < 1:2892120/48‑1 ACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAA > 1:6556901/1‑49 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 1:1309535/1‑49 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG > 1:5366426/1‑50 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG > 1:3495689/1‑50 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG < 1:755375/50‑1 GCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGT > 1:1004815/1‑50 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG > 1:121284/1‑50 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG < 1:813345/50‑1 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG < 1:6392150/50‑1 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG > 1:3996741/1‑50 CGCCCAGCGA‑TTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC < 1:2728295/50‑1 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC > 1:5945847/1‑50 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT < 1:1026987/50‑1 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC > 1:278300/1‑50 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC < 1:2498944/50‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCC < 1:975542/50‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:1633075/50‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA > 1:1447579/1‑50 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA > 1:3263240/1‑50 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:1179171/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:4769400/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:5741045/50‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:4474289/1‑50 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:4128735/1‑50 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:209540/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT < 1:2352375/50‑1 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:1022975/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGCGGCTCCATCGT > 1:1511445/1‑50 ATTTCAGCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT < 1:5870541/50‑1 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG < 1:4217850/50‑1 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG < 1:2822891/50‑1 TTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG > 1:6726041/1‑50 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC > 1:2260155/1‑50 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG < 1:217/49‑1 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC < 1:4547256/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:866367/1‑49 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG < 1:65212/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG < 1:2560945/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:4700725/1‑49 TCAACTGAATGGATGCAGCCTCCCTAAAAAAGAGGCTCCATCGTGGCGGA > 1:5369139/1‑50 CAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT > 1:4570810/1‑50 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT < 1:2556494/50‑1 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT < 1:2633611/50‑1 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT < 1:2716038/50‑1 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT < 1:4853031/50‑1 GAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG > 1:3375386/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 1:3951099/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 1:5726519/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:5089717/49‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:1078216/49‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT < 1:1554100/48‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT < 1:5844582/48‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTG < 1:1856546/50‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTG < 1:96246/50‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTG < 1:4184128/50‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > 1:3717297/1‑49 TGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > 1:1335328/1‑50 GGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > 1:1096160/1‑50 GGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > 1:2352214/1‑50 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |