| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 98 [0] | [0] 101 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 92 (1.040) | 57/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
Only 100 of 101 total aligned reads displayed.
CTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACG > NC_000913/4325118‑4325215 | acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa < 1:2999345‑M2/2‑1 (MQ=255)acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa < 1:2571315‑M2/2‑1 (MQ=255)acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa > 1:6401824‑M2/49‑50 (MQ=255)acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa < 1:6162423‑M2/2‑1 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt > 1:4874126‑M2/48‑50 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 1:5602077‑M2/3‑1 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 1:1092374‑M2/3‑1 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt > 1:3515659‑M2/48‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:5200123‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:3952359‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:1284087‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:268173‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:1003943‑M2/47‑50 (MQ=255) ggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:6085369‑M2/46‑49 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:3894473‑M2/6‑1 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:5761577‑M2/6‑1 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:4790971‑M2/6‑1 (MQ=255) acctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAg < 1:1162922‑M2/7‑1 (MQ=255) acctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAg < 1:2670762‑M2/7‑1 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc > 1:5358579‑M2/43‑50 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc > 1:6414258‑M2/43‑50 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc < 1:1557857‑M2/8‑1 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc > 1:2544371‑M2/42‑50 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc > 1:2795906‑M2/42‑50 (MQ=255) tgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt > 1:5947143‑M2/41‑50 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt < 1:2333152‑M2/10‑1 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc < 1:3776695‑M2/12‑1 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc < 1:4053489‑M2/13‑1 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc < 1:5202298‑M2/13‑1 (MQ=255) tgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:3414778‑M2/37‑49 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCt < 1:1267594‑M2/14‑1 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCt < 1:6425530‑M2/14‑1 (MQ=255) tgcccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaa < 1:2892120‑M2/17‑1 (MQ=255) acccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaa > 1:6556901‑M2/33‑49 (MQ=255) cccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa > 1:1309535‑M2/32‑49 (MQ=255) cgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAg > 1:3495689‑M2/30‑50 (MQ=255) cgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAg > 1:5366426‑M2/30‑50 (MQ=255) cgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAg < 1:755375‑M2/21‑1 (MQ=255) gccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGt > 1:1004815‑M2/29‑50 (MQ=255) ccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTg < 1:813345‑M2/23‑1 (MQ=255) ccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTg > 1:121284‑M2/28‑50 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg > 1:3996741‑M2/27‑50 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg < 1:6392150‑M2/24‑1 (MQ=255) gcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGc > 1:5945847‑M2/26‑50 (MQ=255) cgcccagcgattcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGc < 1:2728295‑M2/25‑1 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt < 1:1026987‑M2/26‑1 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:278300‑M2/24‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc < 1:2498944‑M2/27‑1 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTcc < 1:975542‑M2/28‑1 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa > 1:3263240‑M2/22‑50 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa > 1:1447579‑M2/22‑50 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa < 1:1633075‑M2/29‑1 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt < 1:1179171‑M2/30‑1 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt < 1:4769400‑M2/30‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:5741045‑M2/31‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:4128735‑M2/19‑50 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:209540‑M2/19‑50 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:4474289‑M2/19‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:1022975‑M2/18‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt < 1:2352375‑M2/33‑1 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGCGGCTCCATCGt > 1:1511445‑M2/18‑50 (MQ=255) atttcagcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt < 1:5870541‑M2/33‑1 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 1:2822891‑M2/34‑1 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 1:4217850‑M2/34‑1 (MQ=255) ttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg > 1:6726041‑M2/16‑50 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg < 1:217‑M2/35‑1 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGc > 1:2260155‑M2/15‑50 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGc < 1:4547256‑M2/36‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:4700725‑M2/13‑49 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 1:2560945‑M2/37‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:866367‑M2/13‑49 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 1:65212‑M2/37‑1 (MQ=255) tcaactgaatgGATGCAGCCTCCCTAAAAAAGAGGCTCCATCGTGGCGGa > 1:5369139‑M2/12‑50 (MQ=255) caactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:4570810‑M2/11‑50 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:2716038‑M2/43‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:2633611‑M2/43‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:4853031‑M2/43‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:2556494‑M2/43‑1 (MQ=255) gaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtg > 1:3375386‑M2/6‑50 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt < 1:5844582‑M2/44‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt < 1:1554100‑M2/44‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt < 1:3951099‑M2/46‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt < 1:5726519‑M2/46‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtg < 1:1078216‑M2/45‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtg < 1:5089717‑M2/45‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgtg < 1:1856546‑M2/47‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgtg < 1:4184128‑M2/47‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgtg < 1:96246‑M2/47‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt > 1:3717297‑M2/4‑49 (MQ=255) tgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGa > 1:1335328‑M2/3‑50 (MQ=255) gGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:1096160‑M2/2‑50 (MQ=255) gGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:2352214‑M2/2‑50 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:1609641/1‑49 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 1:2443089/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 1:3072903/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:289394/1‑49 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 1:973385/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:2837863/1‑49 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACg < 1:5593538/50‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACg < 1:3094249/50‑1 (MQ=255) | CTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACG > NC_000913/4325118‑4325215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |