| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 98 [0] | [0] 101 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 92 (1.040) | 57/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGG > NC_000913/4299578‑4299676 | cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:1260158/1‑50 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:1517537/1‑50 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:5403052/1‑50 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:2007418/1‑49 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:3932208/1‑49 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:5989468/1‑49 (MQ=255) aCGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGga < 1:6162423‑M1/50‑3 (MQ=255) aCGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGga < 1:2999345‑M1/50‑3 (MQ=255) aCGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGga > 1:6401824‑M1/1‑48 (MQ=255) aCGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGga < 1:2571315‑M1/50‑3 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:1092374‑M1/50‑4 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat > 1:3515659‑M1/1‑47 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:5602077‑M1/50‑4 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat > 1:4874126‑M1/1‑47 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:5200123‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:268173‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:1284087‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:1003943‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:3952359‑M1/1‑46 (MQ=255) ggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:6085369‑M1/1‑45 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 1:5761577‑M1/50‑7 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 1:4790971‑M1/50‑7 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 1:3894473‑M1/50‑7 (MQ=255) aCCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcag < 1:1162922‑M1/50‑8 (MQ=255) aCCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcag < 1:2670762‑M1/50‑8 (MQ=255) cctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagc < 1:1557857‑M1/50‑9 (MQ=255) cctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagc > 1:5358579‑M1/1‑42 (MQ=255) cctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagc > 1:6414258‑M1/1‑42 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc > 1:2795906‑M1/1‑41 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc > 1:2544371‑M1/1‑41 (MQ=255) tgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct > 1:5947143‑M1/1‑40 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc < 1:3776695‑M1/50‑13 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct < 1:2333152‑M1/48‑11 (MQ=255) ctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc < 1:4053489‑M1/50‑14 (MQ=255) ctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc < 1:5202298‑M1/50‑14 (MQ=255) tgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 1:3414778‑M1/1‑36 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct < 1:6425530‑M1/48‑15 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct < 1:1267594‑M1/48‑15 (MQ=255) tgcccgcCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaa < 1:2892120‑M1/48‑18 (MQ=255) aCCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaa > 1:6556901‑M1/1‑32 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa > 1:1309535‑M1/1‑31 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaag < 1:755375‑M1/50‑22 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaag > 1:5366426‑M1/1‑29 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaag > 1:3495689‑M1/1‑29 (MQ=255) gccgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagt > 1:1004815‑M1/1‑28 (MQ=255) ccgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtg > 1:121284‑M1/1‑27 (MQ=255) ccgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtg < 1:813345‑M1/50‑24 (MQ=255) cgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtgg < 1:6392150‑M1/50‑25 (MQ=255) cgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtgg > 1:3996741‑M1/1‑26 (MQ=255) cgccCAGCGA‑TTCATCAACTGAATGgatgcagcctccctaaaaaagtggc < 1:2728295‑M1/50‑26 (MQ=255) gccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggc > 1:5945847‑M1/1‑25 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct < 1:1026987‑M1/50‑27 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc > 1:278300‑M1/1‑23 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc < 1:2498944‑M1/50‑28 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcc < 1:975542‑M1/50‑29 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca < 1:1633075‑M1/50‑30 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca > 1:1447579‑M1/1‑21 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca > 1:3263240‑M1/1‑21 (MQ=255) gCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccat < 1:1179171‑M1/50‑31 (MQ=255) gCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccat < 1:4769400‑M1/50‑31 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:5741045‑M1/50‑32 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:4128735‑M1/1‑18 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:209540‑M1/1‑18 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:4474289‑M1/1‑18 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt > 1:1022975‑M1/1‑17 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt < 1:2352375‑M1/50‑34 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagcggctccatcgt > 1:1511445‑M1/1‑17 (MQ=255) aTTTCAGCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt < 1:5870541‑M1/50‑34 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg < 1:2822891‑M1/50‑35 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg < 1:4217850‑M1/50‑35 (MQ=255) ttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg > 1:6726041‑M1/1‑15 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc > 1:2260155‑M1/1‑14 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg < 1:217‑M1/49‑36 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc < 1:4547256‑M1/49‑37 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg > 1:4700725‑M1/1‑12 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg > 1:866367‑M1/1‑12 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg < 1:65212‑M1/49‑38 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg < 1:2560945‑M1/49‑38 (MQ=255) tcaACTGAATGgatgcagcctccctaaaaaagaggctccatcgtggcgga > 1:5369139‑M1/1‑11 (MQ=255) caACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 1:4570810‑M1/1‑10 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat < 1:2556494‑M1/50‑44 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat < 1:2633611‑M1/50‑44 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat < 1:2716038‑M1/50‑44 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat < 1:4853031‑M1/50‑44 (MQ=255) gAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg > 1:3375386‑M1/1‑5 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt < 1:5726519‑M1/50‑47 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt < 1:3951099‑M1/50‑47 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg < 1:5089717‑M1/49‑46 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg < 1:1078216‑M1/49‑46 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt < 1:1554100‑M1/48‑45 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt < 1:5844582‑M1/48‑45 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtg < 1:1856546‑M1/50‑48 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtg < 1:4184128‑M1/50‑48 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtg < 1:96246‑M1/50‑48 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt > 1:3717297‑M1/1‑3 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtga > 1:1335328‑M1/1‑2 (MQ=255) ggatgcagcctccctaaaaaagtggctccatcgtggcggattattgtgac > 1:2352214‑M1/1‑1 (MQ=255) ggatgcagcctccctaaaaaagtggctccatcgtggcggattattgtgac > 1:1096160‑M1/1‑1 (MQ=255) | CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGG > NC_000913/4299578‑4299676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |