New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 380111	0 (0.000)	42 (0.540) +CGAGAT	28/86	0.9	60.8%	coding (732/774 nt)	yaiO	outer membrane protein YaiO
	?	NC_000913	4070444 =	62 (0.700)					intergenic (‑43/+71)	yihR/yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase

GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCA  >  NC_000913/380062‑380154                                                  |                                            gAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTa                                             >  1:2244016/1‑50 (MQ=255)     gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgag                                         <  1:358511‑M1/50‑5 (MQ=255)     gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                            >  1:2207321‑M1/1‑46 (MQ=255)      aaTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgaga                                        <  1:6043258‑M1/50‑6 (MQ=255)      aaTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                            >  1:2214405‑M1/1‑45 (MQ=255)       aTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagat                                       <  1:5024977‑M1/50‑7 (MQ=255)          aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga                                    <  1:1266971‑M1/50‑10 (MQ=255)          aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg                                     <  1:3590025‑M1/49‑9 (MQ=255)          aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg                                     <  1:5112150‑M1/49‑9 (MQ=255)             aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacgg                                 >  1:6380618‑M1/1‑38 (MQ=255)              tttCCAGGTCAGACGGGCTGCAAGTTGCAGCCCGTTAcgagatggacggt                                >  1:3826483‑M1/1‑37 (MQ=255)              tttCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggt                                <  1:1979390‑M1/50‑14 (MQ=255)                tCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtc                               <  1:1093888‑M1/49‑15 (MQ=255)                tCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtc                               <  1:2513981‑M1/49‑15 (MQ=255)                 ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcc                              <  1:4308974‑M1/49‑16 (MQ=255)                 ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcc                              <  1:3771797‑M1/49‑16 (MQ=255)                  cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc                            <  1:4325121‑M1/50‑18 (MQ=255)                  cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc                            <  1:381948‑M1/50‑18 (MQ=255)                   aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                           >  1:2497159‑M1/1‑32 (MQ=255)                   aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                           <  1:2492481‑M1/50‑19 (MQ=255)                   aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                           >  1:4730446‑M1/1‑32 (MQ=255)                    ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc                          <  1:1336313‑M1/50‑20 (MQ=255)                      tCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgc                        >  1:5615000‑M1/1‑29 (MQ=255)                       cAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcc                       >  1:3300477‑M1/1‑28 (MQ=255)                        aGACGGGCTGCAAGTTGCAGACCGTTAcgcgctggacggtcccctcgccc                      >  1:6318880‑M1/1‑27 (MQ=255)                        aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc                      >  1:4184341‑M1/1‑27 (MQ=255)                        aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc                      >  1:2344429‑M1/1‑27 (MQ=255)                         gACGGGCTGCAAGTTGCAGACCGTTAcgagatgtacggtcccctcgcccc                     >  1:5674970‑M1/1‑26 (MQ=255)                         gACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccc                     >  1:2650843‑M1/1‑26 (MQ=255)                          aCGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccc                    >  1:3653509‑M1/1‑25 (MQ=255)                          aCGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccc                    >  1:2776085‑M1/1‑25 (MQ=255)                          aCGGGCTGCAAGTTGCAGACAGTTAcgagatggacggtcccctcgccccc                    <  1:164577‑M1/50‑26 (MQ=255)                           cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct                   >  1:5062140‑M1/1‑24 (MQ=255)                             ggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttg                 >  1:1319998‑M1/1‑22 (MQ=255)                              gCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgg                >  1:3514537‑M1/1‑21 (MQ=255)                                  cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg               >  1:3445342‑M1/1‑17 (MQ=255)                                  cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg               >  1:258996‑M1/1‑17 (MQ=255)                                   aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga             >  1:3711977‑M1/1‑16 (MQ=255)                                    aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag          >  1:1957106‑M1/1‑15 (MQ=255)                                     gTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagg         >  1:6473029‑M1/1‑14 (MQ=255)                                      ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg        <  1:1193157‑M1/50‑38 (MQ=255)                                       tGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt       >  1:2736283‑M1/1‑12 (MQ=255)                                         cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggtt      <  1:6581203‑M1/49‑40 (MQ=255)                                          aGACCGTTAcgagatggacggtcccctcgcccccttggggagagggttag    <  1:265911‑M1/50‑42 (MQ=255)                                           gACCGTTAcgagatggacggtcccctcgcccccttggggagagggttagg   <  1:6096446‑M1/50‑43 (MQ=255)                                            aCCGTTAcgagatggacggtcccctcgcccccttggggagagggttaggg  <  1:4497640‑M1/50‑44 (MQ=255)                                            aCCGTTAcgagatggacggtcccctcgcccccttggggagagggttaggg  >  1:4328052‑M1/1‑7 (MQ=255)                                            aCCGTTAcgagatggacggtcccctcgcccccttggggagagggttaggg  <  1:3650776‑M1/50‑44 (MQ=255)                                                  |                                            GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCA  >  NC_000913/380062‑380154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.