Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 94 [0] | [0] 92 | [mngR]–mngB | [mngR],mngA,mngB |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 765207 | 0 (0.000) | 88 (1.010) | 51/96 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA > NC_000913/765158‑765255 | gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 1:3445880‑M1/50‑2 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:330483‑M1/1‑49 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:1066220‑M1/49‑1 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2950052‑M1/1‑49 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2091146‑M1/1‑49 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:6183718‑M1/1‑48 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:6405860‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:912032‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:2730879‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:5252402‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:1510613‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag < 1:6223875‑M1/50‑4 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 1:1904016‑M1/50‑5 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:592622‑M1/1‑46 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:1134151‑M1/50‑6 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:3947521‑M1/50‑6 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:2046754‑M1/50‑6 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:5074995‑M1/50‑6 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:5652836‑M1/1‑44 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:6695057‑M1/1‑44 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:175240‑M1/1‑44 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:5650275‑M1/50‑8 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:3839726‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGCCATCGGTATTAtagcaat > 1:3328859‑M1/1‑42 (MQ=255) tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc > 1:4907718‑M1/1‑41 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca > 1:3743943‑M1/1‑40 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa < 1:509360‑M1/49‑11 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:4078497‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:4789628‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 1:4695236‑M1/49‑12 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 1:5346396‑M1/49‑12 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTTATCGGTATTAtagcaatcaaacc < 1:5473807‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:1296350‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 1:4057311‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 1:4758168‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 1:2638130‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:5206564‑M1/50‑14 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg < 1:6012977‑M1/50‑15 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg < 1:1132797‑M1/50‑15 (MQ=255) gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:4107628‑M1/1‑34 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:2504016‑M1/1‑33 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag < 1:2969481‑M1/50‑18 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccga < 1:1962245‑M1/48‑16 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:246336‑M1/1‑32 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc < 1:6069094‑M1/50‑19 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:3022205‑M1/1‑32 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:4310536‑M1/1‑31 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:5231209‑M1/1‑30 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:3746614‑M1/1‑30 (MQ=255) aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:2867465‑M1/1‑29 (MQ=255) aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:5132604‑M1/1‑29 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat < 1:1137400‑M1/50‑26 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat < 1:5642967‑M1/50‑26 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat > 1:1549049‑M1/1‑25 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat < 1:6494675‑M1/50‑26 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg < 1:4882611‑M1/50‑27 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg < 1:1563106‑M1/50‑27 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:2274294‑M1/50‑28 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:5714084‑M1/50‑28 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc > 1:3471108‑M1/1‑23 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc > 1:1534729‑M1/1‑23 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc > 1:397594‑M1/1‑23 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:2609862‑M1/50‑28 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:6578653‑M1/50‑28 (MQ=255) aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg > 1:2545759‑M1/3‑20 (MQ=255) aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg > 1:2770921‑M1/3‑20 (MQ=255) aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg > 1:868649‑M1/3‑20 (MQ=255) aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg > 1:6218477‑M1/3‑20 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg > 1:4304792‑M1/2‑19 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg > 1:5241084‑M1/2‑19 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc < 1:311059‑M1/50‑33 (MQ=255) tataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:1823214‑M1/1‑17 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:909570‑M1/1‑16 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccag < 1:5907616‑M1/50‑36 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcca < 1:3249665‑M1/49‑35 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:3472115‑M1/1‑15 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat < 1:4976055‑M1/50‑38 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat < 1:3247437‑M1/50‑38 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccaga < 1:3428093‑M1/49‑37 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt > 1:5219400‑M1/1‑12 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt < 1:2963068‑M1/50‑39 (MQ=255) cATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg > 1:4010922‑M1/1‑11 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt > 1:3862108‑M1/1‑10 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt > 1:3196882‑M1/1‑10 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt < 1:1926739‑M1/50‑41 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt > 1:1806479‑M1/1‑10 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg < 1:923966‑M1/49‑43 (MQ=255) tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgac > 1:5875146‑M1/1‑5 (MQ=255) attatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca > 1:3387466‑M1/1‑4 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaa < 1:5139280‑M1/50‑48 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaa < 1:3628607‑M1/49‑47 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaa < 1:2139766‑M1/49‑47 (MQ=255) tatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag > 1:259011‑M1/1‑2 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag < 1:6444963‑M1/49‑49 (MQ=255) | GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA > NC_000913/765158‑765255 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |