BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	765,208	Δ5,405 bp		[mngR]–mngB	[mngR], mngA, mngB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	765208	770612	5405	94 [0]	[0] 92	[mngR]–mngB	[mngR],mngA,mngB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 765207	0 (0.000)	88 (1.010)	51/96	0.0	100%	coding (669/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
*	?	NC_000913	770613 =	0 (0.000)	88 (1.010)	51/96	0.0	100%	intergenic (+2/‑845)	mngB/cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I

GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA  >  NC_000913/765158‑765255

gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt                                                 <  1:3445880‑M1/50‑2 (MQ=255)

gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                  >  1:330483‑M1/1‑49 (MQ=255)

gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                  <  1:1066220‑M1/49‑1 (MQ=255)

gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                  >  1:2950052‑M1/1‑49 (MQ=255)

gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                  >  1:2091146‑M1/1‑49 (MQ=255)

 cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                  >  1:6183718‑M1/1‑48 (MQ=255)

  gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               >  1:6405860‑M1/1‑47 (MQ=255)

  gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               >  1:912032‑M1/1‑47 (MQ=255)

  gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               >  1:2730879‑M1/1‑47 (MQ=255)

  gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               >  1:5252402‑M1/1‑47 (MQ=255)

  gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               >  1:1510613‑M1/1‑47 (MQ=255)

  gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               <  1:6223875‑M1/50‑4 (MQ=255)

   atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                                              <  1:1904016‑M1/50‑5 (MQ=255)

   atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               >  1:592622‑M1/1‑46 (MQ=255)

    tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                                             <  1:1134151‑M1/50‑6 (MQ=255)

    tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                                             <  1:3947521‑M1/50‑6 (MQ=255)

    tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                                             <  1:2046754‑M1/50‑6 (MQ=255)

    tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                                             <  1:5074995‑M1/50‑6 (MQ=255)

     gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                            >  1:5652836‑M1/1‑44 (MQ=255)

     gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                            >  1:6695057‑M1/1‑44 (MQ=255)

     gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                            >  1:175240‑M1/1‑44 (MQ=255)

      atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                           <  1:5650275‑M1/50‑8 (MQ=255)

       ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                                          <  1:3839726‑M1/50‑9 (MQ=255)

       ttttCGCTGCGCTATCAGGGTAAA‑TTATAGCCATCGGTATTAtagcaat                                           >  1:3328859‑M1/1‑42 (MQ=255)

        tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                                          >  1:4907718‑M1/1‑41 (MQ=255)

         ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca                                         >  1:3743943‑M1/1‑40 (MQ=255)

          tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                                        <  1:509360‑M1/49‑11 (MQ=255)

           cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                                      >  1:4078497‑M1/1‑38 (MQ=255)

           cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                                      >  1:4789628‑M1/1‑38 (MQ=255)

           cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                                       <  1:4695236‑M1/49‑12 (MQ=255)

           cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                                       <  1:5346396‑M1/49‑12 (MQ=255)

            gCTGCGCTATCAGGGTAAA‑TTATAGTTATCGGTATTAtagcaatcaaacc                                     <  1:5473807‑M1/50‑14 (MQ=255)

            gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                     <  1:1296350‑M1/50‑14 (MQ=255)

            gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                     >  1:4057311‑M1/1‑37 (MQ=255)

            gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                     >  1:4758168‑M1/1‑37 (MQ=255)

            gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                     >  1:2638130‑M1/1‑37 (MQ=255)

            gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                     <  1:5206564‑M1/50‑14 (MQ=255)

             cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                    <  1:6012977‑M1/50‑15 (MQ=255)

             cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                    <  1:1132797‑M1/50‑15 (MQ=255)

               gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                    >  1:4107628‑M1/1‑34 (MQ=255)

                cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag                                 >  1:2504016‑M1/1‑33 (MQ=255)

                cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag                                 <  1:2969481‑M1/50‑18 (MQ=255)

                cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccga                                   <  1:1962245‑M1/48‑16 (MQ=255)

                 gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                >  1:246336‑M1/1‑32 (MQ=255)

                 gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                <  1:6069094‑M1/50‑19 (MQ=255)

                 gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                >  1:3022205‑M1/1‑32 (MQ=255)

                  cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                >  1:4310536‑M1/1‑31 (MQ=255)

                   tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                              >  1:5231209‑M1/1‑30 (MQ=255)

                   tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                              >  1:3746614‑M1/1‑30 (MQ=255)

                    aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                              >  1:2867465‑M1/1‑29 (MQ=255)

                    aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                              >  1:5132604‑M1/1‑29 (MQ=255)

                        gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat                         <  1:1137400‑M1/50‑26 (MQ=255)

                        gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat                         <  1:5642967‑M1/50‑26 (MQ=255)

                        gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat                         >  1:1549049‑M1/1‑25 (MQ=255)

                        gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat                         <  1:6494675‑M1/50‑26 (MQ=255)

                         ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg                        <  1:4882611‑M1/50‑27 (MQ=255)

                         ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg                        <  1:1563106‑M1/50‑27 (MQ=255)

                          gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc                       <  1:2274294‑M1/50‑28 (MQ=255)

                          gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc                       <  1:5714084‑M1/50‑28 (MQ=255)

                          gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc                       >  1:3471108‑M1/1‑23 (MQ=255)

                          gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc                       >  1:1534729‑M1/1‑23 (MQ=255)

                          gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc                       >  1:397594‑M1/1‑23 (MQ=255)

                          gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc                       <  1:2609862‑M1/50‑28 (MQ=255)

                          gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc                       <  1:6578653‑M1/50‑28 (MQ=255)

                              aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg                    >  1:2545759‑M1/3‑20 (MQ=255)

                              aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg                    >  1:2770921‑M1/3‑20 (MQ=255)

                              aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg                    >  1:868649‑M1/3‑20 (MQ=255)

                              aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg                    >  1:6218477‑M1/3‑20 (MQ=255)

                               attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg                   >  1:4304792‑M1/2‑19 (MQ=255)

                               attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg                   >  1:5241084‑M1/2‑19 (MQ=255)

                                ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                  <  1:311059‑M1/50‑33 (MQ=255)

                                 tataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                  >  1:1823214‑M1/1‑17 (MQ=255)

                                  ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                  >  1:909570‑M1/1‑16 (MQ=255)

                                   taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccag               <  1:5907616‑M1/50‑36 (MQ=255)

                                   taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcca                <  1:3249665‑M1/49‑35 (MQ=255)

                                   taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                  >  1:3472115‑M1/1‑15 (MQ=255)

                                     gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat             <  1:4976055‑M1/50‑38 (MQ=255)

                                     gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat             <  1:3247437‑M1/50‑38 (MQ=255)

                                     gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccaga              <  1:3428093‑M1/49‑37 (MQ=255)

                                      tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt            >  1:5219400‑M1/1‑12 (MQ=255)

                                      tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt            <  1:2963068‑M1/50‑39 (MQ=255)

                                       cATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg           >  1:4010922‑M1/1‑11 (MQ=255)

                                        aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt          >  1:3862108‑M1/1‑10 (MQ=255)

                                        aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt          >  1:3196882‑M1/1‑10 (MQ=255)

                                        aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt          <  1:1926739‑M1/50‑41 (MQ=255)

                                        aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt          >  1:1806479‑M1/1‑10 (MQ=255)

                                           ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg        <  1:923966‑M1/49‑43 (MQ=255)

                                             tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgac      >  1:5875146‑M1/1‑5 (MQ=255)

                                              attatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca     >  1:3387466‑M1/1‑4 (MQ=255)

                                               ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaa   <  1:5139280‑M1/50‑48 (MQ=255)

                                               ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaa    <  1:3628607‑M1/49‑47 (MQ=255)

                                               ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaa    <  1:2139766‑M1/49‑47 (MQ=255)

                                                tatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag  >  1:259011‑M1/1‑2 (MQ=255)

                                                 atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag  <  1:6444963‑M1/49‑49 (MQ=255)

GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA  >  NC_000913/765158‑765255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`