| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 94 [0] | [0] 92 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 88 (1.010) | 51/96 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
CCTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770564‑770662 | gcgatgattttcgctgcgctatcagggtaaattatagtcatcggtattat < 1:3445880‑M2/1‑1 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:912032‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:6405860‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg < 1:6223875‑M2/3‑1 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:1510613‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:5252402‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:2730879‑M2/48‑50 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:592622‑M2/47‑49 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc < 1:1904016‑M2/4‑1 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:1134151‑M2/5‑1 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:5074995‑M2/5‑1 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:3947521‑M2/5‑1 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:2046754‑M2/5‑1 (MQ=255) gattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa > 1:175240‑M2/45‑50 (MQ=255) gattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa > 1:6695057‑M2/45‑50 (MQ=255) gattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa > 1:5652836‑M2/45‑50 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt < 1:5650275‑M2/7‑1 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 1:3839726‑M2/8‑1 (MQ=255) ttttcgctgcgctatcagggtaaattatagccatcggtattaTAGCAAt > 1:3328859‑M2/43‑49 (MQ=255) tttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc > 1:4907718‑M2/42‑49 (MQ=255) ttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCa > 1:3743943‑M2/41‑49 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa < 1:509360‑M2/10‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa < 1:4695236‑M2/11‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa < 1:5346396‑M2/11‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc > 1:4789628‑M2/39‑50 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc > 1:4078497‑M2/39‑50 (MQ=255) gctgcgctatcagggtaaattatagttatcggtattaTAGCAATCAAAcc < 1:5473807‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 1:2638130‑M2/38‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 1:4057311‑M2/38‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:1296350‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 1:4758168‑M2/38‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:5206564‑M2/13‑1 (MQ=255) ctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg < 1:1132797‑M2/14‑1 (MQ=255) ctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg < 1:6012977‑M2/14‑1 (MQ=255) gcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg > 1:4107628‑M2/35‑48 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGa < 1:1962245‑M2/15‑1 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg < 1:2969481‑M2/17‑1 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg > 1:2504016‑M2/34‑50 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc < 1:6069094‑M2/18‑1 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:246336‑M2/33‑50 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:3022205‑M2/33‑50 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:4310536‑M2/32‑49 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:5231209‑M2/31‑50 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:3746614‑M2/31‑50 (MQ=255) atcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:5132604‑M2/30‑49 (MQ=255) atcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:2867465‑M2/30‑49 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat < 1:5642967‑M2/25‑1 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat < 1:1137400‑M2/25‑1 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat > 1:1549049‑M2/26‑50 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat < 1:6494675‑M2/25‑1 (MQ=255) ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg < 1:1563106‑M2/26‑1 (MQ=255) ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg < 1:4882611‑M2/26‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc < 1:5714084‑M2/27‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc > 1:1534729‑M2/24‑50 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc > 1:397594‑M2/24‑50 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc < 1:6578653‑M2/27‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc < 1:2274294‑M2/27‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc < 1:2609862‑M2/27‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc > 1:3471108‑M2/24‑50 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg > 1:6218477‑M2/21‑50 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg > 1:2545759‑M2/21‑50 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg > 1:2770921‑M2/21‑50 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg > 1:868649‑M2/21‑50 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg > 1:4304792‑M2/20‑50 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg > 1:5241084‑M2/20‑50 (MQ=255) ttatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc < 1:311059‑M2/32‑1 (MQ=255) tatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:1823214‑M2/18‑49 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:909570‑M2/17‑48 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:3472115‑M2/16‑47 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCa < 1:3249665‑M2/34‑1 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAg < 1:5907616‑M2/35‑1 (MQ=255) gtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGa < 1:3428093‑M2/36‑1 (MQ=255) gtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAt < 1:3247437‑M2/37‑1 (MQ=255) gtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAt < 1:4976055‑M2/37‑1 (MQ=255) tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt < 1:2963068‑M2/38‑1 (MQ=255) tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt > 1:5219400‑M2/13‑50 (MQ=255) catcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg > 1:4010922‑M2/12‑50 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt > 1:3196882‑M2/11‑50 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt > 1:1806479‑M2/11‑50 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt > 1:3862108‑M2/11‑50 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt < 1:1926739‑M2/40‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg < 1:923966‑M2/42‑1 (MQ=255) tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc > 1:5875146‑M2/6‑49 (MQ=255) attaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:3387466‑M2/5‑49 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaaa < 1:5139280‑M2/47‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa < 1:3628607‑M2/46‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa < 1:2139766‑M2/46‑1 (MQ=255) taTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg > 1:259011‑M2/3‑50 (MQ=255) aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg < 1:6444963‑M2/48‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAggg > 1:1466370/1‑50 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg < 1:4282668/49‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCACGGCCAGATTGTTGACAAAggg < 1:2321756/50‑1 (MQ=255) | CCTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770564‑770662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |