| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 105 [0] | [0] 104 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 104 (1.170) | 65/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
Only 100 of 105 total aligned reads displayed.
ACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCATT > NC_000913/2286351‑2286449 | aCAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTcc > 1:3144091/1‑50 (MQ=255) cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:2659925‑M1/1‑49 (MQ=255) cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:1317723‑M1/1‑49 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtg < 1:5980015‑M1/50‑3 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtg < 1:5459828‑M1/50‑3 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:3601136‑M1/1‑48 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:6083023‑M1/1‑47 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:5205835‑M1/1‑47 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:723967‑M1/1‑47 (MQ=255) aCCGTGACGCATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag < 1:1253407‑M1/50‑5 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag < 1:10971‑M1/50‑5 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag > 1:5731534‑M1/1‑46 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag > 1:4971719‑M1/1‑46 (MQ=255) ccGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagc < 1:5668266‑M1/50‑6 (MQ=255) cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct > 1:1131854‑M1/1‑44 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt < 1:5959837‑M1/50‑8 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt < 1:418633‑M1/50‑8 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt < 1:5810972‑M1/50‑8 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt < 1:2441921‑M1/50‑8 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt > 1:549934‑M1/1‑43 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt > 1:1607572‑M1/1‑43 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt < 1:6700262‑M1/50‑9 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:6170667‑M1/1‑42 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:5176853‑M1/1‑42 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt < 1:4042803‑M1/50‑9 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt < 1:2604209‑M1/50‑9 (MQ=255) gACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:1875903‑M1/1‑41 (MQ=255) gACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:4252453‑M1/1‑41 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttca < 1:2359318‑M1/50‑11 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc < 1:2677951‑M1/49‑10 (MQ=255) cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat > 1:5566091‑M1/1‑39 (MQ=255) cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat > 1:1237587‑M1/1‑39 (MQ=255) acaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatc < 1:1477756‑M1/50‑13 (MQ=255) acaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatc > 1:2944418‑M1/1‑38 (MQ=255) acaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatc > 1:794011‑M1/1‑38 (MQ=255) acaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatc > 1:2074901‑M1/1‑38 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc < 1:3953635‑M1/50‑14 (MQ=255) tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta < 1:2581335‑M1/50‑16 (MQ=255) tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta > 1:1091103‑M1/1‑35 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat > 1:1470988‑M1/1‑33 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat < 1:2576179‑M1/49‑17 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga < 1:3258288‑M1/50‑19 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg > 1:3110342‑M1/1‑32 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg > 1:5575881‑M1/1‑32 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaa < 1:2596855‑M1/50‑20 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga > 1:1702150‑M1/1‑31 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat < 1:1012541‑M1/50‑22 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:629231‑M1/1‑29 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat < 1:1388342‑M1/50‑22 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:4719008‑M1/1‑28 (MQ=255) tGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatt > 1:5130931‑M1/1‑27 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaat < 1:328933‑M1/50‑26 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaat < 1:5435986‑M1/50‑26 (MQ=255) ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt > 1:2682106‑M1/1‑24 (MQ=255) aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc > 1:3593260‑M1/1‑22 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt > 1:3450573‑M1/1‑19 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg < 1:725916‑M1/49‑31 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg < 1:2447116‑M1/49‑31 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt < 1:4600361‑M1/49‑32 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt > 1:2496052‑M1/1‑18 (MQ=255) cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt > 1:4676385‑M1/1‑17 (MQ=255) cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt > 1:6272571‑M1/1‑17 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa < 1:2996481‑M1/50‑37 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa < 1:3473832‑M1/50‑37 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaa < 1:4691966‑M1/49‑36 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaa < 1:5092655‑M1/49‑36 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa < 1:4300714‑M1/48‑35 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 1:195333‑M1/1‑14 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta < 1:3039501‑M1/47‑34 (MQ=255) tATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:5456122‑M1/1‑13 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag < 1:3348029‑M1/49‑38 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:1824540‑M1/1‑12 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca < 1:6008220‑M1/50‑40 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagc < 1:4391008‑M1/49‑39 (MQ=255) cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat > 1:2802434‑M1/1‑10 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:6634017‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:879609‑M1/50‑42 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:1056581‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:2280136‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:429251‑M1/50‑42 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:2347747‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:3397235‑M1/50‑42 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:3072437‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat < 1:3311653‑M1/49‑41 (MQ=255) aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg < 1:6364776‑M1/50‑44 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg < 1:894015‑M1/50‑45 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg > 1:1114863‑M1/1‑6 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg < 1:2803144‑M1/50‑45 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg < 1:6567443‑M1/50‑45 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggt < 1:4795287‑M1/50‑46 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggt < 1:4899680‑M1/50‑46 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg > 1:3643714‑M1/1‑5 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg > 1:1661967‑M1/1‑5 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:3123040‑M1/1‑4 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:6106692‑M1/1‑4 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggtac < 1:2919550‑M1/50‑48 (MQ=255) tCCtgagctttcatcctatgaaattaattgccgttaaaagcattgggta > 1:3319096‑M1/1‑3 (MQ=255) cctgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:4630017‑M1/1‑2 (MQ=255) ctgagctttcatcctatgaaattaattgctgttaaaagcattgggtacag < 1:6107885‑M1/50‑50 (MQ=255) ctgagctttcatcctatgaaattaattgctgttaaaagcattgggtacag < 1:1193570‑M1/50‑50 (MQ=255) | ACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCATT > NC_000913/2286351‑2286449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |